Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18060 496 / 1e-177 SH3 domain-containing protein (.1) AT4G34660 316 / 2e-106 SH3 domain-containing protein (.1.2.3) AT1G31440 194 / 4e-58 SH3 domain-containing protein (.1) AT4G39020 84 / 4e-19 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011975 [exp] 637 / 0 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 570 / 0 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10028783 [exp] 347 / 2e-118 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 343 / 5e-117 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 326 / 3e-110 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 323 / 4e-109 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10033292 [exp] 259 / 1e-83 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 231 / 7e-72 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1) Lus10028785 [exp] 206 / 3e-65 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354700 [exp] 535 / 0 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 531 / 0 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.009G123200 [exp] 336 / 3e-114 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 335 / 5e-114 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G128800 [exp] 286 / 2e-94 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 271 / 1e-88 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10004584 pacid=23149763 polypeptide=Lus10004584 locus=Lus10004584.g ID=Lus10004584.BGIv1.0 annot-version=v1.0 ATGGACGCATTGAGGAAGCAAGCCAGCAGGCTGAGGGATCAAGTCGCAAAGCAACAACAAGCTGTGATAAAGCAATTCAGTGCCAGTGGCTACGAGAGCT CGGATTCCGTAGTAATCGACGAGGTTGAGCTGCATAGGCATCAGCAGCTGGAGAAGCTCTACAGAACTACTCGAGCTGGCAGAGATTTTCAGAAGGACAT TGTGAGAGCAGCGGAAGCGCTTACTGCAATCGGATATAAACATATTGAAGCAGGAACCAAATTCTCCGAGGATTGCTGCAGATATGGAACTGAGAACATC AGCGACGCCATGCTGGCGAAAGCTGCAGCTATATATGGCGATGCTCGTAAACATGTTGAGAAGGAGACCGAGGATTTGAATACCGTGCTCGCTTCTCAGG TCTTGGATCCTCTTAGGGCAATGGTTGTTGGTGCTCCTTTAGAAGATGCTCGACATCTTGCACAACGATATAGTCGTATGAGGCAAGAAGCCGAACTACA GGCTACTGAAGTTTCGAGAAGGCAAGCGCGAGTAAGGGAAGCCCCGATTCCTGAGAACGTTGCGAAGTTGCATGCAGCAGAGGCAAAGATGCAAGAACTG CGGGCAAACATGGCAGTTCTAGGCAAAGAAGCTGCTTCGGCATTGGCTGCAGTTGAAGCACAGCAGCAAAGATTGACATTCCAAAGGCTTGTTTCTTTGG TTGAAGGTGAAAAGAATTACCACTTGCGAATCGGTGCTATACTTAGTGAAGTCGAAACCGAGATGGTTTCGGATAAACAACGGAGAGATGGAGCTCCTCC TGTCATCCCATCTACAGGAACTCCATTGCAAAATGGCTCAGAGAAAAGCACATACTTCTTGGCTGAAGCAACACATCCTTTCTATGCAGAAACAGACAAG GAGCTGAGTTTGGCTGTTGGGGACTTCATCATCGTTCGAAAGGTTAACCCGACTGGCTGGTCGGAAGGAGAATGCAAAGGGAAATCAGGCTGGTTCCCTT CAGCCTACATTGAGCGGCGCCAGAGGCTTCCTACTGCCCTTTAG
AA sequence Show only first row Show all	>Lus10004584 pacid=23149763 polypeptide=Lus10004584 locus=Lus10004584.g ID=Lus10004584.BGIv1.0 annot-version=v1.0 MDALRKQASRLRDQVAKQQQAVIKQFSASGYESSDSVVIDEVELHRHQQLEKLYRTTRAGRDFQKDIVRAAEALTAIGYKHIEAGTKFSEDCCRYGTENI SDAMLAKAAAIYGDARKHVEKETEDLNTVLASQVLDPLRAMVVGAPLEDARHLAQRYSRMRQEAELQATEVSRRQARVREAPIPENVAKLHAAEAKMQEL RANMAVLGKEAASALAAVEAQQQRLTFQRLVSLVEGEKNYHLRIGAILSEVETEMVSDKQRRDGAPPVIPSTGTPLQNGSEKSTYFLAEATHPFYAETDK ELSLAVGDFIIVRKVNPTGWSEGECKGKSGWFPSAYIERRQRLPTAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	4.4	0.8640
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	4.5	0.8430
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	4.7	0.8597
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	7.1	0.8479
AT4G33625			unknown protein		Lus10007070 [exp]	11.7	0.8151
AT1G74160			unknown protein		Lus10021148 [exp]	13.2	0.8355
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	13.4	0.8417
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	14.0	0.8295
					Lus10034430 [exp]	17.4	0.7705
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	18.7	0.8077

Compare expression of checked genes

Lus10004584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.