Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29530 53 / 5e-08 unknown protein AT4G18070 45 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011974 [exp] 498 / 2e-178 AT1G29530 48 / 2e-06 unknown protein Lus10015254 [exp] 112 / 1e-28 AT1G29530 50 / 3e-07 unknown protein Lus10025373 [exp] 79 / 1e-16 AT1G29530 51 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077700 [exp] 105 / 3e-25 AT1G29530 50 / 1e-06 unknown protein Potri.001G354600 [exp] 86 / 9e-19 AT1G29530 54 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004585 pacid=23149776 polypeptide=Lus10004585 locus=Lus10004585.g ID=Lus10004585.BGIv1.0 annot-version=v1.0 ATGCCATCAGGTGCGAAGAAGAGAAAGGCTGCTAAGAAAAAGAAGCAACAGCAGGCCTACCCCTCTGGAAACAACTCACAAGGAAATGGTGATAAAAAGG TGGAGGATGAGAGGGATAGTGATACTACCAGTGAGTTAAACTCCCCCGCATCAGAAGGGAATCCTCATCACCAGCATACATTTAGCGAGGGCAATGGAGG AGAATCTGAGAAAAGTGGTCAATCGCCAGATGAATCAGTTGTTTCCAAGAACAAGCTCGAAGGGAAAGAAGGAATTGGAGAAGCAGGTAGAAGTGAGGAA GCCGGACAACAACAGGATGTTGAAGTAAAAATCGAGGAAGATGTGAAGAGCCTTGAGGTCAGCATTGAGCATGTCGATTCTGAAAAGGTTTCGAATGGTG ACAGTAGCTCAACCAGTAGTTCTTCTGATGACGAGTCCTCGGCAGTTGATAATAAGGGTGGTGAACATTTGCAAAATACAGCTGTTTTAACACCTGCTGA AGAGGTGATACCAATTCCTGAAATGAATGCAGTTATTGCCACTTCTGAAGAGGTGGTGATGCCGAATGAAGTCAGCAACGATATGGGTAAGAACGATGCT GCACCTCTTGATTCGGATACACCGTCGGTGCCTATGTCTGAGGTCATGGAGCGTCAATTGGAAGCTACTCAAGTTGTGGATTCTGAGGTTATCGACATAG TTGAAAGAGGGTTGAAGGAAAATGAGGTGAAGCTGTCATTGCCAAAATCTTATCCGTCTAACGAAGTGCCAGTGCCTTTGGATTCTGGCAAAAATGAAGA AGTTATGCCCACCACTTCTCATCAGAGTGCTGAGATGGGTGTTTCTTATGTAACTGTGAAATCATTGACGACATCAGGTGCTGTTGAGACCACTGTCAAT CAGAACCCCCCTGGTACTGAAACCAGCGCCAAAGACACCAACTTTTCTTATTCGATTGAGAAACAGCCTCTGATAGCCTCTGCGCCGCGTGTATCCCAGC GAACCTCGTTTCTGAATTGCTGTGGCTTGTTTGATGCTTTCACTAGCTCGGATCGGTGA
AA sequence Show only first row Show all	>Lus10004585 pacid=23149776 polypeptide=Lus10004585 locus=Lus10004585.g ID=Lus10004585.BGIv1.0 annot-version=v1.0 MPSGAKKRKAAKKKKQQQAYPSGNNSQGNGDKKVEDERDSDTTSELNSPASEGNPHHQHTFSEGNGGESEKSGQSPDESVVSKNKLEGKEGIGEAGRSEE AGQQQDVEVKIEEDVKSLEVSIEHVDSEKVSNGDSSSTSSSSDDESSAVDNKGGEHLQNTAVLTPAEEVIPIPEMNAVIATSEEVVMPNEVSNDMGKNDA APLDSDTPSVPMSEVMERQLEATQVVDSEVIDIVERGLKENEVKLSLPKSYPSNEVPVPLDSGKNEEVMPTTSHQSAEMGVSYVTVKSLTTSGAVETTVN QNPPGTETSAKDTNFSYSIEKQPLIASAPRVSQRTSFLNCCGLFDAFTSSDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29530			unknown protein		Lus10004585 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	3.7	0.7944
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	9.8	0.7702
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	21.7	0.7131
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	21.8	0.7154
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008907 [exp]	27.9	0.6520
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	28.6	0.6847
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	37.5	0.6834
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	42.1	0.7037
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	44.9	0.6809
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10028222 [exp]	46.9	0.6596

Compare expression of checked genes

Lus10004585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.