Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27520 46 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT1G14315 40 / 0.0006 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011994 [exp] 171 / 5e-51 ND / Lus10007848 [exp] 125 / 9e-33 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10007847 [exp] 108 / 7e-27 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10004758 [exp] 87 / 8e-19 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099733 [exp] 42 / 0.0004 AT3G16210 92 / 2e-20 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10004586 pacid=23149758 polypeptide=Lus10004586 locus=Lus10004586.g ID=Lus10004586.BGIv1.0 annot-version=v1.0 ATGGTCAAAGTCGTGCTTGTTCTTACCTATGTGTCAAATGTTAGTCCCCGCTCTGTGTCGAAGTTCACATCAGAGCTGTATGTTTATACATCAGGAGTAG GAGCGGGACGGAGGAAGTTAGCTATTGGACTCCCTTATTCAGAAGCTTATATTTTTAATGGTCATTATTCAGGTCCCATGCTTGCTACTGCTATGCACTT TAAGGGGTCAATTTACTGGCTTACTTCTGCTGCAACTCTATATGTTCTGACATTCGATTTGGGGACTGAAGTTTTCTGCATGGTGAAGTGCCCTTTTGAT AGTTTTCATGATGATGATGAGTTACACTGTGGACTACACGTATATCGCGATTCCATCGCTGTATTCGCAACCATGTCACTCGACTGCTTGAGCGTCGATG TATGGATGCTGAGTAGTAGTAATAATGAAGAGGAGTTGTGTTGGATCCAAGATTCAAGTGGTATAGGACCGTTCCTTCAAGGGTTGTTTGTGACTGGATG TTGGAAGGACGATCTGCTTGTTGCAGCGCCTGCGGAGGATCACGAGAATCTTGGGGTTTATGATACGGTTAAACAAGAAATCAAACTTGTGAATGTTGTA TCTTCCATCTACACCGTTTACTTACAAAGAGACTCTGGTTCCCATTCAGTAACAAAACTCATTGACAAGAAGCATCGCCCTATTCCAGTAACAAGATTGT CGATAATTTGGAGCGTCGTAGGCACTGCAGCTTGCATCTTCATCATCTCTCCAACAACAACGAAGTTTATAAACTCTTTTAACTTTAGGTTTAATTCGTG TTTGAGACGCCGCGCCATGACTCAGTACTTTGTTTGTTATCCTCTCTTAAGTAAAATTGGAATAGCTCACTGTTGTTGTTCTGATTGTTTGATCTATTTC CAGGAATTGAAATTGACTTGA
AA sequence Show only first row Show all	>Lus10004586 pacid=23149758 polypeptide=Lus10004586 locus=Lus10004586.g ID=Lus10004586.BGIv1.0 annot-version=v1.0 MVKVVLVLTYVSNVSPRSVSKFTSELYVYTSGVGAGRRKLAIGLPYSEAYIFNGHYSGPMLATAMHFKGSIYWLTSAATLYVLTFDLGTEVFCMVKCPFD SFHDDDELHCGLHVYRDSIAVFATMSLDCLSVDVWMLSSSNNEEELCWIQDSSGIGPFLQGLFVTGCWKDDLLVAAPAEDHENLGVYDTVKQEIKLVNVV SSIYTVYLQRDSGSHSVTKLIDKKHRPIPVTRLSIIWSVVGTAACIFIISPTTTKFINSFNFRFNSCLRRRAMTQYFVCYPLLSKIGIAHCCCSDCLIYF QELKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	0	1
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10000574 [exp]	2.0	0.7545
AT3G62710			Glycosyl hydrolase family prot...		Lus10034128 [exp]	2.4	0.7541
AT1G32920			unknown protein		Lus10001526 [exp]	7.4	0.7554
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Lus10020334 [exp]	9.8	0.6905
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10001077 [exp]	12.5	0.6752
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	17.4	0.7280
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	18.8	0.7250
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	23.5	0.6399
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	24.1	0.6962
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	30.3	0.7148

Compare expression of checked genes

Lus10004586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.