Gene [FLAX] | FIBexDB

Lus10004588 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G04330	119 / 1e-34		AtRbcX1	homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10011972 [exp]	187 / 4e-61	AT4G04330	189 / 1e-61	homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.011G010300 [exp]	106 / 1e-29	AT4G04330	209 / 6e-70	homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)

PFAM info

Representative CDS sequence

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>Lus10004588 pacid=23149786 polypeptide=Lus10004588 locus=Lus10004588.g ID=Lus10004588.BGIv1.0 annot-version=v1.0

ATGCATCATATTACTAGCAATAAAAGATCATTCACTGTATTAGGTATAGGGTTTGGAGAGTCTCTGGAGGGCAAAGCAGCAAACTACCTCGTCTGTTTCT

TCACTTACATTGCCGTGGAGGCTGTCGCCTCTCAGCTCCAGAGCTATAACAGGGAAGGATACGCAGAGTTGATGGAATTCGTGGAAGCGAATCCCCTCAA

GGGGGGACGAGTTCTGTGCTGGCCTCATGCGCCAGTCTTCCAGGCACCAGGCCTTTGGCGAGTTAGAGATCCTACCGTCTTCTGTATGAGATTTCTAGGT

GTTGTCTCGTTTGAAGTGAGATCAGCTTACAGCAAGATGGACTTTGAGTGGGACAACCTCGAGCGATTAGCTGTCAAGAAGGTTGGTGACTCCAACACCC

GGCTCATGCGAGACTATGTCCTCGAAATCACCCACGTCGACAGTGAAGACAAGTGA

AA sequence

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>Lus10004588 pacid=23149786 polypeptide=Lus10004588 locus=Lus10004588.g ID=Lus10004588.BGIv1.0 annot-version=v1.0

MHHITSNKRSFTVLGIGFGESLEGKAANYLVCFFTYIAVEAVASQLQSYNREGYAELMEFVEANPLKGGRVLCWPHAPVFQAPGLWRVRDPTVFCMRFLG

VVSFEVRSAYSKMDFEWDNLERLAVKKVGDSNTRLMRDYVLEITHVDSEDK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10004588 [exp]	0	1
					Lus10011199 [exp]	16.1	0.6276

Lus10004588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.