Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18100 228 / 1e-78 Ribosomal protein L32e (.1) AT5G46430 226 / 1e-77 Ribosomal protein L32e (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012195 [exp] 244 / 6e-85 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10007541 [exp] 244 / 6e-85 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10011970 [exp] 242 / 3e-84 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10020410 [exp] 241 / 1e-83 AT4G18100 242 / 3e-84 Ribosomal protein L32e (.1) Lus10031699 [exp] 239 / 5e-83 AT4G18100 240 / 2e-83 Ribosomal protein L32e (.1) Lus10009591 [exp] 240 / 4e-82 AT4G18100 243 / 4e-83 Ribosomal protein L32e (.1) Lus10031120 [exp] 241 / 1e-79 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353900 [exp] 231 / 9e-80 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.014G191000 [exp] 231 / 9e-80 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.002G249000 [exp] 228 / 1e-78 AT4G18100 226 / 5e-78 Ribosomal protein L32e (.1) Potri.011G078200 [exp] 226 / 8e-78 AT4G18100 225 / 2e-77 Ribosomal protein L32e (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01655 [flax] [poplar] Ribosomal_L32e Ribosomal protein L32
Representative CDS sequence Show only first row Show all	>Lus10004589 pacid=23149754 polypeptide=Lus10004589 locus=Lus10004589.g ID=Lus10004589.BGIv1.0 annot-version=v1.0 ATGGCCGTGCCACTGTTGACGAAGAAGATTGTGAAGAAGAGGGTCAAACAGTTCAAGAGGCCCCAAGCCGATCGGAAGATATGCGTCAAGGAAAACTGGA GGAGGCCAAAGGGTATCGACTCCAGGGTCAGGAGAAAGTTCAAGGGTGTAACGTTGATGCCCAACATCGGTTACGGCTCAGACAAGAAAACCCGACACTA TCTTCCCAATGGCTTCAAGAAGTTCGTAGTCCACAACACTAAGGAGCTCGAGGTTCTGATGATGCACAACAGGACCTACTGTGCCGAGATCGCCCATGAC GTCTCGACCAGAAAGAGGAAGGACATCGTTGAGCGTGCTGCGCAGTTGGACATTGTCGTCACCAACAAGCTTGCTAGGCTCAGGAGCCAGGAAGACGAGT AG
AA sequence Show only first row Show all	>Lus10004589 pacid=23149754 polypeptide=Lus10004589 locus=Lus10004589.g ID=Lus10004589.BGIv1.0 annot-version=v1.0 MAVPLLTKKIVKKRVKQFKRPQADRKICVKENWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELEVLMMHNRTYCAEIAHD VSTRKRKDIVERAAQLDIVVTNKLARLRSQEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	0	1
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	1.4	0.9008
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	1.7	0.8800
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	2.8	0.9013
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	3.5	0.8752
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	4.4	0.8351
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10031985 [exp]	4.9	0.8474
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	6.0	0.8672
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	6.7	0.8706
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	8.9	0.8664
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10035401 [exp]	9.5	0.8385

Compare expression of checked genes

Lus10004589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.