Plant FIBer expression Database

Lus10004590 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G46420 559 / 0 16S rRNA processing protein RimM family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011969
[exp]
1032 / 0 AT5G46420 579 / 0.0 16S rRNA processing protein RimM family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G353800
[exp]
689 / 0 AT5G46420 553 / 0.0 16S rRNA processing protein RimM family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF01782 RimM RimM N-terminal domain
CL0350 PRC-barrel PF05239 PRC PRC-barrel domain
Representative CDS sequence
>Lus10004590 pacid=23149767 polypeptide=Lus10004590 locus=Lus10004590.g ID=Lus10004590.BGIv1.0 annot-version=v1.0
ATGCAGCCAACGGTTTCGCTTCTCCGCCCTTCAAATTTCCCGCCATGCCACCAACGTACTTTTTTGCCGCTCGCTGCCGCATTTCCAGCCGCTATAGCTC
CGCCGTTGTTTTCTTTTCCCGCCACGCAGTTCCGCGCCCAATCTCTCCGCTCCAACTTCCTCGCAGCGTCTCCTCTCCACAGCACCGCTACCATGGAGGC
TGTTGAAACGGATAAGAGTGGTTCGGAGCTCGTCGAAGTAGGTTATGTGTCAAGTGTTCATGGGATTCACGGAGAGATTTGTCTAGAGCCAACTACTGAC
TTCGCTGAGCTTCGATTCTCCACGCCAGGGAGAAGATGGTTGAAGCAATTTGTTTACGGTGAAGAAGTGATTAAAGAAGTTGAGTTGGTGGAAGGAAGGG
AAAAGCCTGGGAAGAAGAGTTGGGTGCTTAGACTTGCAGGGCTCGAGACAGTGGATGAGGCTAAGCAACTTGTTGGATCAACTTTACTTGCGAGGGAAGA
TGAAAGACCTAAACTTGAGGAAGGGGAGTTCTACACTCGTGATCTGATTGGCATGAGAGTAATTCTCAAGGATACATCTACATGTGTTGGAACTGTTGTT
GACCTTTTCGACAGTGGGGCATCCGACATTTTAAGAGTCATGCTTTACCCATCAAGTGAAGTAAGTGATGCGACTGAAAAGCCAGTGCTGGATGAAACTG
GTGTGTCTGGTCGGCTTGTCTGGATTCCGTTTGTTGAAGCAATTGTTCCAGATGTCGACATGAATAAAAGAGAAATTTGGATCACACCACCAAAAGGACT
TCTTGAGCTGAATAATCGTGCAGATGAGAGGTCCAAGAAGGAACGGCGCCAGCTTGAGTGGAAAGAGAGGAAGAAGTCCCAAAGACAGCTTATAGCTGCG
AAAAAAAAGTTATCTGAAATGGGGCAGAAACATGTATTTGATGGACTCAGATATGGGGAAAAGGACCAGAGGAGCTTGTTGGCAACTGAAATTGTCGCAG
CAAATTCTAGTCTCCTTCAGTACGCGCTCAAAAACATCGGGGTCTCATCCAACAGGTGGAGTGCAACTGAATTCATCAGCGAAGCAAGAGCCAAGTTAAA
GAATAGTTCTTTGAAGATTTCCCAAGATCAGCTTACCCACTCCAGGGTAAATGATTCGGAGCCAACTTCGCGGTTCCATGAGAATGGATGTCATCTTGTA
TCTGAAGGGAAAATTGCAATTGTCTTGGTCGTGAGCAACCTCGGGAACAACGGAGCAGACAGTGATGATAGTCAACTTGCTGACTCTAAAAGCAGCCAGA
CTGAAACTTTTCTCTCGAAGTCGTTTTCTGACGACCAGACGTTTCTAAAGATGGAAGACCGTGGATCTATTCCTTTGGTGTTGGTTTGTGCCAAGCAAGA
GATCGAGCCTTTGAAAGAACTGTTTACAAGCAACGACTTCTTTGCATTCGACTGCAACAAGGTTTGGTTTTTGGAAGAAGAGAAGCTCCCCGTTGTTACT
AGTTCTACAGACGAAAACGGCCCGAACGAAATCTTGATGAAGTCCCCATGGGAAATACTAACGGCGCCAGTTGGATCTGGAGGTGTTCTTCACTCACTTT
CATCACACAGCATCTCCAATACCTTAAGTGAAATTGGTGTCAAATACATCGAGGTCAGACATTTCCGTCCAACTTTCAATGTTCCCTTGAACCTATCCCT
TGATATTTCAGCTCACTCTTTTGAGATTCGTACAACATATTTTATGAAACGAAGATTCCTATGTTTCCAGGTTTGCAGCAGCAGCAAAATGTCTGGCACC
TGGACGCCTATGTTTCCGGGACTGGTCGACACGCAAGGAGCAGACATTGGTTTCCAGGTCTCTCAAGACTTGACCGGGTCAGAAGAGAGTTTTGACATTG
TATTCTCGGTGGAATTCGCCAAGTCGTTGGAGAAGCAGATGGATAAACTCCATTTCGATGCAGTCCCTAAGGCAAATTCGCATGTTAGGCTAGTTGAGAA
AGACTGGGTGGACGTTGTGTCATCTTCTCCCAACTCTTATGAACTTCAGTGTTCGATCTACTGCGCCGTAAATGCTTGTCCCCTGGAGAAAGTGTGTATG
TTGGAAATAACAGAATGA
AA sequence
>Lus10004590 pacid=23149767 polypeptide=Lus10004590 locus=Lus10004590.g ID=Lus10004590.BGIv1.0 annot-version=v1.0
MQPTVSLLRPSNFPPCHQRTFLPLAAAFPAAIAPPLFSFPATQFRAQSLRSNFLAASPLHSTATMEAVETDKSGSELVEVGYVSSVHGIHGEICLEPTTD
FAELRFSTPGRRWLKQFVYGEEVIKEVELVEGREKPGKKSWVLRLAGLETVDEAKQLVGSTLLAREDERPKLEEGEFYTRDLIGMRVILKDTSTCVGTVV
DLFDSGASDILRVMLYPSSEVSDATEKPVLDETGVSGRLVWIPFVEAIVPDVDMNKREIWITPPKGLLELNNRADERSKKERRQLEWKERKKSQRQLIAA
KKKLSEMGQKHVFDGLRYGEKDQRSLLATEIVAANSSLLQYALKNIGVSSNRWSATEFISEARAKLKNSSLKISQDQLTHSRVNDSEPTSRFHENGCHLV
SEGKIAIVLVVSNLGNNGADSDDSQLADSKSSQTETFLSKSFSDDQTFLKMEDRGSIPLVLVCAKQEIEPLKELFTSNDFFAFDCNKVWFLEEEKLPVVT
SSTDENGPNEILMKSPWEILTAPVGSGGVLHSLSSHSISNTLSEIGVKYIEVRHFRPTFNVPLNLSLDISAHSFEIRTTYFMKRRFLCFQVCSSSKMSGT
WTPMFPGLVDTQGADIGFQVSQDLTGSEESFDIVFSVEFAKSLEKQMDKLHFDAVPKANSHVRLVEKDWVDVVSSSPNSYELQCSIYCAVNACPLEKVCM
LEITE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G46420 16S rRNA processing protein Ri... Lus10004590
[exp]
0 1
AT5G26820 RTS3, MAR1, ATI... MULTIPLE ANTIBIOTIC RESISTANCE... Lus10020698
[exp]
2.2 0.9417
AT3G46630 Protein of unknown function (D... Lus10024797
[exp]
2.4 0.9308
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Lus10000221
[exp]
5.5 0.9337
AT2G24060 Translation initiation factor ... Lus10035814
[exp]
6.6 0.9131
AT2G34860 EDA3 embryo sac development arrest ... Lus10023593
[exp]
8.7 0.9290
AT1G32550 FdC1 ferredoxin C 1, 2Fe-2S ferredo... Lus10004576
[exp]
8.7 0.9280
AT1G49380 cytochrome c biogenesis protei... Lus10011311
[exp]
9.5 0.9210
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Lus10021576
[exp]
9.9 0.9258
AT3G53460 CP29 chloroplast RNA-binding protei... Lus10023191
[exp]
11.0 0.9243
AT2G01755 unknown protein Lus10005230
[exp]
11.2 0.9274

Lus10004590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.