Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29400 831 / 0 AML5 MEI2-like protein 5 (.1.2) AT4G18120 666 / 0 AML3 MEI2-like 3 (.1.2) AT2G42890 582 / 0 AML2, MEI2 MEI2-like 2 (.1.2.3) AT5G07290 273 / 7e-79 AML4 MEI2-like 4 (.1) AT5G61960 267 / 2e-76 AML1 MEI2-like protein 1 (.1.2) AT3G26120 135 / 9e-33 TEL1 terminal EAR1-like 1 (.1) AT1G67770 118 / 1e-27 TEL2 terminal EAR1-like 2 (.1) AT5G07930 84 / 2e-17 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 75 / 8e-15 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 69 / 5e-12 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011968 [exp] 1524 / 0 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10020769 [exp] 922 / 0 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 911 / 0 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10032537 [exp] 291 / 1e-84 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10043204 [exp] 288 / 8e-84 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10036953 [exp] 128 / 2e-30 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 127 / 3e-30 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 96 / 6e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 100 / 1e-21 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059800 [exp] 992 / 0 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 966 / 0 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.003G162700 [exp] 343 / 1e-103 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 333 / 6e-100 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.015G106000 [exp] 326 / 2e-97 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 293 / 8e-90 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.012G107100 [exp] 299 / 7e-88 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.008G183000 [exp] 135 / 8e-33 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.010G051100 [exp] 135 / 1e-32 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 102 / 4e-23 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10004591 pacid=23149771 polypeptide=Lus10004591 locus=Lus10004591.g ID=Lus10004591.BGIv1.0 annot-version=v1.0 ATGAAGCAGCATTCGGATAACTTGTTTTCCGGTCATTCCATGATTCAGCCTCTGAATATAGCCAAACCTGCGGGGAACGGTGGATTAGGGATTTTATCCG CATCAAGCGATGCTTCTCTTTTCTCTAGCTCGTTACCGGTTTTACCTCATGAAAAGTTGATCTTGGAAGAGACAGATCATGGTGATCAGGCAGCTGGCAA TGCCTCTGCTGTTGTGGATAAAATTCACCCGAATATTGAAAGTACTGATTTACTTCAAAATGGCAATGCTCATGCCACGGGTGCACTGCTTCCTGATGAC GAGGATGAGCTCTTAGCTGGGATAATGGATGATTTTGATTTGAGTAGGTTACCACTCTCGCTGGAAGACCTAGATGATAATGATCTTTTTGGCAGTGGAG GAGGTCTGGAACTTGAAACTGACCTGCAGGAGAACCTGAGCTTCGGTATCTCTAAACTTAACTTGTCTGATGCTGGAAACGGGATGCCTCAGTACGGTCT TCCTAGTGGTGTAGGAACAGTTGCAGGTGAACATCCATATGGTGAGCATCCTTCAAGAACATTATTTGTTCGAAACATAAACAGTAATGTTGAAGATTCT GAACTGAAGGCTCTGTTTGAGCAATATGGTGACGTTAGGACTCTATACACTGCTTGCAAACATCGGGGTTTTGTGATGATATCTTATTATGACATTCGAG CTGCCCGAACTGCAATGCGTGCATTGCAAAACAAGCCTCTTAGACGGAGAAAACTTGATATACACTTTTCAATTCCTAAGGATAATCCATCTGACAAGGA CATGAATCAAGGAACTCTGGTAGTTTTTAATTTGGATCCGTCTGTTTCAAATGAAGACCTCCGCCAGATATTTGGTGCCTATGGCGAGGTTAAAGAGATA AGGGAAACACCACACAAGCGACACCACAAGTTCATTGAATTTTATGATGTGAGGGCTGCTGAAGCGGCACTTAAACAATTAAATCGCAGTGACATAGCAG GAAAACGCATAAAACTTGAACCGAGTCGCCCCGGTGGTGCTCGTCGAAATTTGATGTTACAACTGAATCAAGAGATTGAACAAGACGAACCGCGTAGTTT CCTCCACCCAGTGGGTTCTCCAGTAACTAACTCTCCACCTGGTAACTGGATACAGTACAGCAGTCCTATAGAACACAATCCTTTACAGAGCCTCAGCAAG TCGCCTGCTTTCAGTACCATGAGCCCAACTAATAACGGCCACCTATCTGGGTTGTCTTCGATTCTTCATTCTCAAGCTTCAAGTGCTGTGAATGTTGCAC CAATTGGCAGAGACCATGGAAGGAGTAACCTTTCACTCCTTGGAGCTGGCTTCCAACAATCACATTCATTACCTGACTCAAAACTGAGCCAATACCATGC AAGCATGTCATCTCTGGGTCCTTCCTCGTCTAATGGATCAGCTGTGGAAACATTATCGGGACCGCAGTTTCTCTGGGGAAGCCCAAAGACACATTCGGAG AAAAATACCATTTCTTCACCCTGGGCAACTCCGTCCACAAGGCATCCTTTTCCATCCAATGGGAAAGGACATGTCTTGCCGTTTTCAGGTCGTCATGGTT CTTTTCTGAGTGCCCAACAGCATCATCATGTTGGATCTGCTCCATCTGGAGTTCCTCTGGAGAGGCACTTAGGATTTCTGCCAGAGTCGCCGAAATCTTC ATTCATGAATCCAGCTTCCTATGGAGGAATTGGTATGGGTCACAACGATGGAAACTTCATGATGAGTATGGGTGCTCGTCCTCCTATGAATGGAGGAGCT AGTATCTCACGAACCATGGCAGAAAATGGCTCTTCAAGTTACAGAATGATGTCTTCGCCAAGGCTTAGTCCTGTTTTCTTAGGCAGTAGCCCATATGCAG GACTAACATCTTCTAGCATGGACGGTTTTAGTGAACGTGGCCGGATAAGACGTGCTGAGAATAATGGAAGCCAAGGAGATAACAAGAAACAGTTTCAGCT CGACTTGGATAAGATCATGAAAGGCGAAGATACTCGGACAACATTAATGATCAAGAATATACCGAACAAGTACACTTCTAAAATGTTGCTTGCTGCCATT GACGAGAAGCACAGGGGAACTTATGATTTCCTCTACTTGCCCATTGATTTTAAGAACAAGTGTAACGTGGGTTATGCTTTTATCAATATGGTGTCTCCTT CGCACATAATCCCGTTTTACGAGGCATTCAATGGTAAGAAGTGGGAGAAATTCAACAGTGAGAAAGTTGCTTCATTGGCTTATGCTAGGATCCAGGGGAA GACAGCTCTTGTCAACCATTTCCAGAATTCAAGTCTGATGAACGAAGACAAACGCTGCCGGCCAATCCTTTTCCGATCTGATGGACAGGAGCTTGTTGAT CAGATCATTCAGGATAATCTACACTCCAGCAGTATGAACATTCAGTTCCATCAGCCGAACGGGTTACATTATGGGGATTCGTCAGGAAGCCCCACCGACG ACTACTCTCTCGAGGATTGCTGA
AA sequence Show only first row Show all	>Lus10004591 pacid=23149771 polypeptide=Lus10004591 locus=Lus10004591.g ID=Lus10004591.BGIv1.0 annot-version=v1.0 MKQHSDNLFSGHSMIQPLNIAKPAGNGGLGILSASSDASLFSSSLPVLPHEKLILEETDHGDQAAGNASAVVDKIHPNIESTDLLQNGNAHATGALLPDD EDELLAGIMDDFDLSRLPLSLEDLDDNDLFGSGGGLELETDLQENLSFGISKLNLSDAGNGMPQYGLPSGVGTVAGEHPYGEHPSRTLFVRNINSNVEDS ELKALFEQYGDVRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI RETPHKRHHKFIEFYDVRAAEAALKQLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQEIEQDEPRSFLHPVGSPVTNSPPGNWIQYSSPIEHNPLQSLSK SPAFSTMSPTNNGHLSGLSSILHSQASSAVNVAPIGRDHGRSNLSLLGAGFQQSHSLPDSKLSQYHASMSSLGPSSSNGSAVETLSGPQFLWGSPKTHSE KNTISSPWATPSTRHPFPSNGKGHVLPFSGRHGSFLSAQQHHHVGSAPSGVPLERHLGFLPESPKSSFMNPASYGGIGMGHNDGNFMMSMGARPPMNGGA SISRTMAENGSSSYRMMSSPRLSPVFLGSSPYAGLTSSSMDGFSERGRIRRAENNGSQGDNKKQFQLDLDKIMKGEDTRTTLMIKNIPNKYTSKMLLAAI DEKHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKTALVNHFQNSSLMNEDKRCRPILFRSDGQELVD QIIQDNLHSSSMNIQFHQPNGLHYGDSSGSPTDDYSLEDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	0	1
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	1.4	0.8843
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	3.0	0.8733
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	5.5	0.8629
AT1G17130			Family of unknown function (DU...		Lus10013706 [exp]	7.5	0.8243
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	10.2	0.8484
AT4G10930			unknown protein		Lus10032402 [exp]	16.7	0.8388
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	17.7	0.8415
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	20.7	0.8124
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	21.1	0.8056
AT3G48860			unknown protein		Lus10043194 [exp]	21.2	0.8298

Compare expression of checked genes

Lus10004591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.