Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18130 320 / 3e-100 PHYE phytochrome E (.1) AT2G18790 299 / 4e-92 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 287 / 7e-88 PHYD phytochrome D (.1) AT1G09570 216 / 9e-63 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 190 / 2e-53 PHYC phytochrome C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011967 [exp] 605 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10016911 [exp] 312 / 7e-97 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10037771 [exp] 311 / 9e-97 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10007594 [exp] 215 / 4e-62 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 214 / 9e-62 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10006388 [exp] 196 / 1e-58 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10012342 [exp] 197 / 1e-55 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10006389 [exp] 194 / 7e-55 AT5G35840 1426 / 0.0 phytochrome C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 314 / 8e-98 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 314 / 9e-98 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 219 / 9e-64 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10004592 pacid=23149782 polypeptide=Lus10004592 locus=Lus10004592.g ID=Lus10004592.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTCATACGTCTTCAAGGGGATTACATGGCAATAGTGCAAAGGCTGAATCCTCTGATTCCTCCGATTTTCTCATCGGATGAGAATGCCTGTT GTTTGGAATGGAACGTTGCTATGGAAAAACTGACAGGTTGGACAAGGCAGGAAGTGATGGCTGTACAAGGGAATCAGCGGTCGAGACACGGAGAAGATTC ACCTCGGAATCTTCGACAGGAATGGGGAATCTGTCGACGTATTCGTAACAGCCAACAGAAGGAGCGACTCGCAAGGAAACATTATCGGTTGTTCTGCTTC TTGCCGACGATTGATCCTGAGGCTAAACATCATCCGATTGAAGTTGTTCATAATAGACAGGAAGAGACGAGAAATTCTAAGAAGCTGAAGGAGTTGGCTT ACTTACGGCAGGAGATGATCAATCCACTGAGCGGAATTCGATTCACTCACATGCTCCTCGAAAGTACAGCGATTTCGGAGAATCTGAAGCAGTTCCTCGA AACAAGTAATGCCTGTGGAAGGCAGATCATGACCATAATTGAAGATGCAGAGTTGGGAAGAATAGAAGAAGGTGGTGTGGAGCTGAGCATGGAAGAGTTT CTCCTGGGAAATGTTTTGGATGCCATAGTAAGCCAAGTGATGATCTTGGTAATGGAAAAGAAGATACAATTGCTTCATGAAGTTCTTGTGGAAGTCAGCA CACTTTCTCTTTATGGCGATCAAATAAGGCTTCAGCTGATACTGTCAGATTTCTTACTGAGCATTGTTCGTCATACACCTCCGAATCAATTGGTCGAGAT CAAGATTTCGCCACGACTGAAGCTGATACAGGATGGCAACGACTTCATTCGGCTACAGTTTAGGATGACACACCCTGGTGAAGGTTTGCCTGCTGCACTC GTCGAGCAAATTGTCGATAATAAAAACCGATGGACTACACAAGAAGGTCTTGCACTTAGCTTGTCGAGGAAGTTACTGAATCGGATGAACGGTCGAGTTC GATATAATCGAGAGCAAAATAGATGTTACTTCCTCATTGATCTTGAATTCAGAACTAAGAAAGGGAGGCAAATGGGGATGCCACCTGATAATAGCAGGTT GATGTAA
AA sequence Show only first row Show all	>Lus10004592 pacid=23149782 polypeptide=Lus10004592 locus=Lus10004592.g ID=Lus10004592.BGIv1.0 annot-version=v1.0 MEKFIRLQGDYMAIVQRLNPLIPPIFSSDENACCLEWNVAMEKLTGWTRQEVMAVQGNQRSRHGEDSPRNLRQEWGICRRIRNSQQKERLARKHYRLFCF LPTIDPEAKHHPIEVVHNRQEETRNSKKLKELAYLRQEMINPLSGIRFTHMLLESTAISENLKQFLETSNACGRQIMTIIEDAELGRIEEGGVELSMEEF LLGNVLDAIVSQVMILVMEKKIQLLHEVLVEVSTLSLYGDQIRLQLILSDFLLSIVRHTPPNQLVEIKISPRLKLIQDGNDFIRLQFRMTHPGEGLPAAL VEQIVDNKNRWTTQEGLALSLSRKLLNRMNGRVRYNREQNRCYFLIDLEFRTKKGRQMGMPPDNSRLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	0	1
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	1.4	0.9530
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	2.4	0.9489
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	3.9	0.9431
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	4.5	0.9402
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	6.3	0.9267
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	7.3	0.9291
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	7.7	0.9375
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	9.5	0.9275
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	11.2	0.9280
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10011493 [exp]	11.4	0.9063

Compare expression of checked genes

Lus10004592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.