Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18130 461 / 6e-153 PHYE phytochrome E (.1) AT2G18790 429 / 3e-140 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 424 / 2e-138 PHYD phytochrome D (.1) AT5G35840 388 / 5e-125 PHYC phytochrome C (.1) AT1G09570 375 / 8e-121 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011967 [exp] 665 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10037771 [exp] 449 / 5e-148 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 449 / 8e-148 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10006389 [exp] 386 / 4e-124 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10012151 [exp] 377 / 2e-120 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10007594 [exp] 372 / 7e-119 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012342 [exp] 320 / 3e-99 AT5G35840 1363 / 0.0 phytochrome C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 469 / 1e-155 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 461 / 1e-152 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 381 / 3e-122 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10004593 pacid=23149760 polypeptide=Lus10004593 locus=Lus10004593.g ID=Lus10004593.BGIv1.0 annot-version=v1.0 ATGATCTGTGATTGTAATGCTGATCAGGTTAGAGTGGTTCAGAGTGAAGAATTGATGCAGCCGTTGTTGCTTGTGAATTCCACGCTTCGGTCTCCTCACG GGTGCTATTCGCAGTACATTGCGAATATGGGTTCGATCGCTTCGTTGGTGCTTTCGGTTACGATAAATGGAAATGATTGGACGAAACTTTGGGGGCTGGT CGTGTGCCACCATTCAACTCCACGGTACGTCCCTTTCCCGCAGCGGTACGTTTCTGATGCAGGCGTTCGGGTTGCAGCTCTACATGGAGCTGCAACTTGC GGCGCAGTTTCTCGAAAAAAAGGTTCTCAAGACGCAGACTTTGCTATGCGATATGCTCCTTCGCGATGCTCCCTTCGGAGTAGTGAACAGTCTCCAAGCA TTATGGATTTGGTTAGGTGCGATGGCGCTGCGCTGTACTACGGCGGGAAGGCGTGGCTGCTTGGTGTGACTCCTACCGAATCGGAAGTGAAAGATCTTGT CAATGGTTGGTTGAGAATCGGTGATTCGACCGGGTTGACTACCGATAGTTTGGCGGACGCTGGATACCCTAGAGCGGAGTTTCTAGGCAATGCGGTGTGT GGAATGGCGATTGCGAGGATTACCTCGCGAGATTTCTTGTTCTGGTTTCGATCTCATACCGCAAAGGAAGTGAAATGGGGCGGGGCTAAGCATCATCCGG ACGAAAAGGACGATGATGGGAAGATGCACCCAAGATCGTCGTTTAAATCGTTTCTCGAGGTGGTGAAGCGGAGAAGCTTGCCGTGGGAGGTTTCCGAGAT CAACGTGATCCACTCGTTGCAATTGATCATGCGACATTCGTTCGAGGAGATGGAGGATATCGGAGCAAAGGCGATGATGGTGGTGGATACGGAAATGGAT GATGATATTGCGGAATTGTGTTCGGTTGCGACCGAAATGGCAAGGTTGATTGAGACAGCAACAGCTCCGATTTTCGGAGTTGATCTGGATGGGTTTGTGA ACGGATGGAACGCGAAAGTTGCTGACTTGACAGGATTGCCAACCGGTGAAGCGATGGGGAAGTCGTTCGTGAACAAAATCGTTCACGAAGATTCGAGGGG CGAAGTCGATAGTCTTTTGACCAAAGCCTTGCAAGGAGAGGAAGAGAAGAATTTCGAGTTGAAGCTGAGGAGATTCGGTCGAGATATCGAACAGCATTTG CCGTGTTCGTTGTGGTCAACGCTTGTACTAGTAGGAGCTATACGAACAGCATCGTAG
AA sequence Show only first row Show all	>Lus10004593 pacid=23149760 polypeptide=Lus10004593 locus=Lus10004593.g ID=Lus10004593.BGIv1.0 annot-version=v1.0 MICDCNADQVRVVQSEELMQPLLLVNSTLRSPHGCYSQYIANMGSIASLVLSVTINGNDWTKLWGLVVCHHSTPRYVPFPQRYVSDAGVRVAALHGAATC GAVSRKKGSQDADFAMRYAPSRCSLRSSEQSPSIMDLVRCDGAALYYGGKAWLLGVTPTESEVKDLVNGWLRIGDSTGLTTDSLADAGYPRAEFLGNAVC GMAIARITSRDFLFWFRSHTAKEVKWGGAKHHPDEKDDDGKMHPRSSFKSFLEVVKRRSLPWEVSEINVIHSLQLIMRHSFEEMEDIGAKAMMVVDTEMD DDIAELCSVATEMARLIETATAPIFGVDLDGFVNGWNAKVADLTGLPTGEAMGKSFVNKIVHEDSRGEVDSLLTKALQGEEEKNFELKLRRFGRDIEQHL PCSLWSTLVLVGAIRTAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	2.6	0.9455
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	3.2	0.9440
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	6.2	0.9425
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	7.1	0.9370
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	9.4	0.9378
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	9.7	0.9194
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10038771 [exp]	10.8	0.9261
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	11.4	0.9272
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10025459 [exp]	11.5	0.9266
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	13.6	0.9355

Compare expression of checked genes

Lus10004593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.