Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46410 301 / 1e-97 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 279 / 6e-89 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G11860 202 / 2e-61 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G29780 78 / 2e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 76 / 4e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 71 / 3e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 55 / 3e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 50 / 2e-06 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004551 [exp] 738 / 0 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 487 / 2e-170 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 189 / 2e-54 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 154 / 1e-39 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10007321 [exp] 77 / 4e-15 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 74 / 2e-14 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 54 / 1e-07 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 53 / 2e-07 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 50 / 2e-06 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078300 [exp] 526 / 0 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 508 / 5e-177 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 203 / 1e-59 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 195 / 1e-56 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.004G062900 [exp] 77 / 2e-15 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 75 / 1e-14 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 58 / 3e-09 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 56 / 2e-08 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 55 / 4e-08 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 54 / 1e-07 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10004596 pacid=23149769 polypeptide=Lus10004596 locus=Lus10004596.g ID=Lus10004596.BGIv1.0 annot-version=v1.0 ATGCCATCACTGAAAATGAAGACAAAACTAAATGGAGGCTCTTTAGGGGAAAGAAGTCTGGGTGTGTGTCAGGCGTCTAGTGTTATATCCAAAAAATCAT GCTCTAATGTCACGGTTTCTCCTTTACTAGAGGCTGATTTGTGTATTCCGAAAAGCCAAGACGATTGCACAGCTTTGTCGAGTGGGGAAACACATGCTCA GGAAACCAGCATCCCTGAAGTGCTTGATCATCAGCGACTGTCAAATCAAGGGAACTCCCATTTTCAGGCACATGATTCATCATCCCGTGTAGATTCTGGA TCCACTGAGAGGATGGATGTTACAAGCAACTGTACAGCTGACTTGGAAACCATTTTTTCACCTGCTTTGGAGCCCATTGGTATTTATAACATGCCCAGCA TAGATGAGAATCCAGGGAACAAGAGTAATCTTAATATCCCAGGGTTTGGAACTGATGGAAGGGATGGTAATATAAGCTTATCTGATTATCAGAGCTGCAA CATATCGGATTTCTCAATCTCCGACATGATTATCTCTAGCATACCGTTTGACGGGAATGCAATGGATAGTGCCACCAGTGAGACTGAATTTTTTCTTGAT TACAGATGTGCTCAGCCAAGTATGTTGTTTGATGTGGCTCAGGAGTACATGATACTCCCTTTTCTTGAGGATACTGTGAAATTGACCAATTCCAATGATC TGAAATCAGGTGAAGAGGCCATTGAAGATTCAGGTGATGCTGGCTTATATCAAGCTATCAGCCAGATAAGAACTTGTAACCAGGAATGTGATCGTATCGT CGACTCTGATCCAGCCGATGATTTTGATCCACAATTCTTTATCAGGAATCTCCCTGAACTATCGGAGGTCGTATCTAATTTTCAGCCGAGTATGTTCCCA AAGGATTCTCAAAGGAGGAAATCAGTTACATTGGTTCTGGACTTGGATGAAACACTTGTTCATTCTACACTGGAGCCTTGTGAAGATGCTGACTTCGCCT TTACCGTTTTCTTCAACATGAAAGAGCACATCGTCTATGTGAAAAAGAGGCCTCACCTGGATGCATTCCTGGAGAGAGTCGCTGAGATGTTCGAGATTAT TATCTTCACAGCCAGTCAAAGCATATATGCTGCACAGCTTTTGGACATACTGGATGCAGATAAGAAACTTATATCTCGACGGGTTTATCGTGAGTCGTGC ATATTTTCAGATGGAACTTACACCAAAGACTTGACAGTCTTGGATGTGGATCTTGCAAAAGTTGCCATAATTGACAATTCTCCACAGGTTTTCAGGTTGC AATTGAATAATGGGATTCCTATCAAGAGTTGGTTTAACGATCCATCAGATTCCGATTTACTATCGTTACTTCCCTTCTTAGAGACCTTGGCTGATGCTGA CGATGTCCGCCCAATAATCGCAAGGAGATTCGGTAACAAGGAATAA
AA sequence Show only first row Show all	>Lus10004596 pacid=23149769 polypeptide=Lus10004596 locus=Lus10004596.g ID=Lus10004596.BGIv1.0 annot-version=v1.0 MPSLKMKTKLNGGSLGERSLGVCQASSVISKKSCSNVTVSPLLEADLCIPKSQDDCTALSSGETHAQETSIPEVLDHQRLSNQGNSHFQAHDSSSRVDSG STERMDVTSNCTADLETIFSPALEPIGIYNMPSIDENPGNKSNLNIPGFGTDGRDGNISLSDYQSCNISDFSISDMIISSIPFDGNAMDSATSETEFFLD YRCAQPSMLFDVAQEYMILPFLEDTVKLTNSNDLKSGEEAIEDSGDAGLYQAISQIRTCNQECDRIVDSDPADDFDPQFFIRNLPELSEVVSNFQPSMFP KDSQRRKSVTLVLDLDETLVHSTLEPCEDADFAFTVFFNMKEHIVYVKKRPHLDAFLERVAEMFEIIIFTASQSIYAAQLLDILDADKKLISRRVYRESC IFSDGTYTKDLTVLDVDLAKVAIIDNSPQVFRLQLNNGIPIKSWFNDPSDSDLLSLLPFLETLADADDVRPIIARRFGNKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	0	1
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	2.6	0.9322
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	3.5	0.9216
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	5.4	0.8946
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	6.6	0.8898
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	6.9	0.9147
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	9.2	0.9152
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	9.6	0.8936
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	11.6	0.9050
AT5G09960			unknown protein		Lus10006803 [exp]	11.8	0.9105
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	12.2	0.8938

Compare expression of checked genes

Lus10004596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.