Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 790 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 742 / 0 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 538 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 503 / 5e-169 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G54510 405 / 3e-131 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G02900 350 / 3e-109 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 338 / 7e-105 ERD (early-responsive to dehydration stress) family protein AT4G04340 334 / 3e-103 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 327 / 8e-101 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 320 / 4e-98 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004550 [exp] 1415 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 1059 / 0 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 686 / 0 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10005223 [exp] 528 / 1e-178 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10030431 [exp] 503 / 8e-169 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10037139 [exp] 497 / 2e-166 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10043455 [exp] 379 / 7e-121 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10002133 [exp] 340 / 3e-105 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10035300 [exp] 339 / 3e-105 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113800 [exp] 904 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.004G115800 [exp] 559 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 516 / 6e-174 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 515 / 2e-173 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 421 / 2e-137 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 332 / 1e-102 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006100 [exp] 327 / 1e-100 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.002G226800 [exp] 323 / 4e-99 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 318 / 4e-97 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 313 / 3e-95 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10004597 pacid=23149753 polypeptide=Lus10004597 locus=Lus10004597.g ID=Lus10004597.BGIv1.0 annot-version=v1.0 ATGGAATTCGCGGCACTTTTAACTTCGGCGGGAATCAACATAGCGCTATTCGTGTTGCTTTTGACACTATACTCTCTTCTTAGAAAGCAACCAAGCAACA GGATTGTGTATTTCGGCCGGATAGCCTCCTTGCAGTTGAGAAGAAGCAATGATGACCCTTTGACCTTGAACAGATTTGTGCCCTGTACTAGTTGGCTTGT TAAGGCTTGGAATACATCCCAGGATGAGATCTTGGCTGTTGGTGGGTTGGATGCTGTTGTTTTCCAGAGATTGCTTGTCTTCAGTATTCGTATCTTTTCC ATTGCGACTTTCGTTTGTGTGTTTCTAGTACTTCCAGTGAATTACTATGGCAAAGAGATGAAACATAAACCCCTTGGAGCAGAATCGTTGGATGTTTTCA CTATTGGGAATGTTCATGAAGGCTCAGGATGGCTTTGGGCTCATTGTGTTGCATTATACATAATATCTTGCTCGACTTGTGCCCTTCTTTACTATGAATG TAAAAGTATCACGGAGATGAGGTTGTCACACATAAAAGGGTCGCTTGCAAATCCTAGTTATTTTAGTGTGCTGGTTCGATCTATTCCGTGTGTTGAAGGA GAATCATACAGCGATACAGTCAAAAAGTTCTTTACAACTTACTATCCTTCAACCTACTTGGCTCACCAAATGGTACACCACGCCAGTGTTGTTCAGAAAT TGTTGGCCGAGGCAGAGAGGATGTGCAAGATGCTCGCATCTGCTTCCTCTAAGGAAGGAAGTTTAAGGGCATTTTGTTTTTGTTCATCAAATACACTGTC CTTTCGCATTCTTGACGACCAACCAGAAACCGAAAATGTTGAGGCGGGGACCGTCAAATATCCTGATTTTGAAATTGCTCCACCAGATAATGAACGGCCC GTTGCTTTTGTCTTCTTCAAGACGCGATATGCTGCTGTTGTTGCCACGGAAATGCTCCAATCCGCAAATCCAATGTTGTGGGTGACAGAAGCAGCCCCGG AACCACTTGATGTTTTGTGGTCAAGCTTGTCTATCCCGTATAAGCAGCTTTGGCTCCGAAAGATAGCAACACTTCTCGCTGCAATAGTATTCATGTTTAT ATTCCTTATCCCCGTGACATTTGTTCAAGGCTTGACTCAACTGGAAAAGTTATCAAAGACATTTCCTTTCCTAAGAGGGCTTTTGAAGAAGGCCTATATA AGTCGTGTGGTGACAGGTTACTTGCCGAGCGTAATCTTGATGCTATTCTTGCTTCTAGTGCCGCCAGTGATGATGCTGTTTTCGAGAATAGAGGCACCGA TATCTCGCAGTTTGAGACAAAAGAGTGCATGCTTGAAGATACTCTACTTCACCATCTGGAATGTTTTCTTTGTCAATGTTCTCTCGGGGTCAATTATTAG TCAACTCAATGTTTTCTCTTCTATAAGAGACATACCTCAGGAACTTGCAAGTGCTATACCCACTCAGGCTAGCTTCTTCATGACCTATGTTTTCACATCA GGTTGGGCAGGCTTGGCCTGTGAATTAATGCAAGTTTTCACTTTTATTTGCAACCTTTTCAAAAAGGTGATCCTCAGAAACAAGCAGGATACACAGTTTT GGCTCATGTCTTTCCCATACCATACGGAGATCCCAAGAGTTCTTTTATTTGCACTCATTGGATTCACTTGTTCAATAATGGCACCTTTAATATTGCCATT TTTGTTGATTTACTTCTCCATGGCGTATCTCATATACAGAAATCAGATTCTCAACGTATATATTAAAAAGTACGACAGTGGGGGGAATTTTTGGCCTTTG ATCCACAATACAACGGTATTCTCATTGGTATTGACACAAATTATAGCTCTTGGTGTATTTGGAATCAAGAACTCTCCAGTTGCATCCGGTTTCACCATCC CTCTCATCATTTGCACACTTTTATACACCGCATATTGCAGGCAGCGGTTTCTGCCTGTTTTCCAGAAACATGCATCTCAGATTCTGATAGACATGGATAG AGAAGACGAAAACAGCGACAGACTTGAAGACATATACAACAAGCTACGTAACGCATATTGCCAGATTCAATTAGCTTCACGGGAAGTTCGACCTGTGTCA CGAGCACCAAATATGCCCGAAACCACCTCCAGTCCAAAAGCTGCCAAACAAGCGTCATTTGAAGACGAGGAGCTAGGAAAGTCGAGCAATGGAGTGTCTG CAATTATCAATGGAAAGCAAAGTCCTTTGAAGTGA
AA sequence Show only first row Show all	>Lus10004597 pacid=23149753 polypeptide=Lus10004597 locus=Lus10004597.g ID=Lus10004597.BGIv1.0 annot-version=v1.0 MEFAALLTSAGINIALFVLLLTLYSLLRKQPSNRIVYFGRIASLQLRRSNDDPLTLNRFVPCTSWLVKAWNTSQDEILAVGGLDAVVFQRLLVFSIRIFS IATFVCVFLVLPVNYYGKEMKHKPLGAESLDVFTIGNVHEGSGWLWAHCVALYIISCSTCALLYYECKSITEMRLSHIKGSLANPSYFSVLVRSIPCVEG ESYSDTVKKFFTTYYPSTYLAHQMVHHASVVQKLLAEAERMCKMLASASSKEGSLRAFCFCSSNTLSFRILDDQPETENVEAGTVKYPDFEIAPPDNERP VAFVFFKTRYAAVVATEMLQSANPMLWVTEAAPEPLDVLWSSLSIPYKQLWLRKIATLLAAIVFMFIFLIPVTFVQGLTQLEKLSKTFPFLRGLLKKAYI SRVVTGYLPSVILMLFLLLVPPVMMLFSRIEAPISRSLRQKSACLKILYFTIWNVFFVNVLSGSIISQLNVFSSIRDIPQELASAIPTQASFFMTYVFTS GWAGLACELMQVFTFICNLFKKVILRNKQDTQFWLMSFPYHTEIPRVLLFALIGFTCSIMAPLILPFLLIYFSMAYLIYRNQILNVYIKKYDSGGNFWPL IHNTTVFSLVLTQIIALGVFGIKNSPVASGFTIPLIICTLLYTAYCRQRFLPVFQKHASQILIDMDREDENSDRLEDIYNKLRNAYCQIQLASREVRPVS RAPNMPETTSSPKAAKQASFEDEELGKSSNGVSAIINGKQSPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	1.0	0.9277
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	2.0	0.8704
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	3.9	0.8605
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	3.9	0.8561
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	4.2	0.8528
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	4.5	0.8565
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	9.2	0.7940
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	9.8	0.7965
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10011812 [exp]	10.5	0.8146
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	11.8	0.7923

Compare expression of checked genes

Lus10004597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.