Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 114 / 8e-33 Protein of unknown function (DUF1278) (.1) AT2G21750 93 / 1e-24 Protein of unknown function (DUF1278) (.1) AT4G39340 87 / 1e-22 Protein of unknown function (DUF1278) (.1) AT2G21740 87 / 1e-22 Protein of unknown function (DUF1278) (.1) AT5G64720 50 / 4e-08 Protein of unknown function (DUF1278) (.1) AT4G35165 39 / 0.0003 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004548 [exp] 172 / 2e-55 AT1G76750 130 / 4e-39 Protein of unknown function (DUF1278) (.1) Lus10027057 [exp] 47 / 7e-07 AT1G76750 50 / 4e-08 Protein of unknown function (DUF1278) (.1) Lus10025591 [exp] 46 / 1e-06 AT1G76750 48 / 6e-08 Protein of unknown function (DUF1278) (.1) Lus10019549 [exp] 39 / 0.0006 AT5G51105 49 / 4e-08 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191800 [exp] 126 / 6e-38 AT1G76750 115 / 7e-34 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 124 / 4e-37 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1) Potri.009G077000 [exp] 122 / 5e-36 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 103 / 5e-29 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306600 [exp] 86 / 8e-22 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.011G078401 [exp] 51 / 9e-09 AT1G76750 54 / 3e-10 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10004598 pacid=23149762 polypeptide=Lus10004598 locus=Lus10004598.g ID=Lus10004598.BGIv1.0 annot-version=v1.0 ATGGCCCCTTCGTTCCACACTCTCGTAGCAGCTCCTTTCCTAATCCTCCTAACCCTCCATCTGCTGACGTGTCCCACTGCAGCACGCCCCACCGTCAGTA GCATCCCCTCCGCTGCCGCCATATCATCACCGGCCCCACCACTCGCTTCGAGGCTGAAACTGGACCAGTCGACAACGACGACCAACTGCTGGGAGTCGCT GATCGAGCTGCAGGCGTGTACTGGGGAGATCATACTCTTCTTCCTCAACGGTGAGACCTACTTGGGCCACGGATGCTGCAGCGCCATACGTGTCATCGGG GAGCACTGCTGGCCCAACTTGATCGAGACGCTTGGGTTCACCGGCGAAGAGAGCGACGTGCTTGAAGGGTATTGTGACCGAGCTGATGATGAAGATGAGG ATGGTGGTGATGAGGGTCATGAGCATCACGCGCCGCCTCCTCCGGCGGGTGTCGCTGTGTCTCCGGCCGCCGTGCATGCTCCGAAGAAGGCTAATTAG
AA sequence Show only first row Show all	>Lus10004598 pacid=23149762 polypeptide=Lus10004598 locus=Lus10004598.g ID=Lus10004598.BGIv1.0 annot-version=v1.0 MAPSFHTLVAAPFLILLTLHLLTCPTAARPTVSSIPSAAAISSPAPPLASRLKLDQSTTTTNCWESLIELQACTGEIILFFLNGETYLGHGCCSAIRVIG EHCWPNLIETLGFTGEESDVLEGYCDRADDEDEDGGDEGHEHHAPPPPAGVAVSPAAVHAPKKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76750			Protein of unknown function (D...		Lus10004598 [exp]	0	1
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	5.8	0.8053
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	7.3	0.7955
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	17.9	0.7517
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	21.8	0.7660
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	22.0	0.7387
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	22.4	0.7480
					Lus10032027 [exp]	23.0	0.5418
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	30.7	0.7104
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	33.0	0.7019
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	34.6	0.7019

Compare expression of checked genes

Lus10004598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.