Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29395 181 / 1e-56 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) AT1G29390 172 / 2e-53 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT3G50830 49 / 6e-07 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 45 / 2e-05 Cold acclimation protein WCOR413 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004547 [exp] 404 / 2e-144 AT1G29395 140 / 3e-41 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10025378 [exp] 266 / 6e-90 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 265 / 2e-89 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10021020 [exp] 49 / 1e-06 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10027946 [exp] 46 / 7e-06 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 44 / 3e-05 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10023833 [exp] 42 / 8e-05 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10012035 [exp] 43 / 0.0001 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 43 / 0.0001 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353500 [exp] 173 / 1e-53 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Potri.004G149100 [exp] 47 / 3e-06 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 47 / 4e-06 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 44 / 4e-05 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10004599 pacid=23149752 polypeptide=Lus10004599 locus=Lus10004599.g ID=Lus10004599.BGIv1.0 annot-version=v1.0 ATGAGCATCATCAGCATATCGTCGAAGCCCAGCTTCTGTCTCCCTAACCGCTTCAGTCTGACAGAGAACCAGCAGCCGCAGCGGGTTCATGCTCTCCAAC GGCATTCTCTTTGCTGCGAGCTCTCTTCCACGACTCCACCTCTTCGCAGCAACAGCGATGCGATTTTGAGGAAGAGGATGGTGGAAGGGAGGAAGATCAG TACCGTTTGCTCCGCTGTTCCCGTCAGTACTGCTCGGAACCTTCAGTGGATCTCAACTATCGCTTCCATAGTGTTGATGCTTGCCAAGGGTACTGATGTG AACAAATGCCTTCTTGTTCCCCTTCTCGCGTTGCAGGCGCCTGCTGCAGTGATCTCTTGGGTTAAGGGTGAATATGGTGTTTGGGCAGCATTTATGGCAC TTGTCGCACGCTTGTTCTTTTCTCTTCCTGGTGAACTAGAGTTGCCATTTGTAGCGTTGCTCTTGGTCATCTTAGCTCCTTATCAGGTTCTGAATTTAAG GTGGGTGGACTTTGAACTCAAATGCACCAGAGACGTTGTTCTCTTTCACTTTGTTCGTCAGCTTATGTTAGACATGCTTTCTCGTATTCAAAATGACAGA GGAACACAAGAAGGTGCCATCATTAGCGTGACGATAGCAGCTTACCTGGCTTTCCAACATTTTTCACGAGACGGCAACATGCAGAAATCATTTGAACAAG GGTCAATTGTTTCCACTGCTGCTATTGTCTGCGTTGCAGTAACCTCATGCTTGCTCTTGATCTGA
AA sequence Show only first row Show all	>Lus10004599 pacid=23149752 polypeptide=Lus10004599 locus=Lus10004599.g ID=Lus10004599.BGIv1.0 annot-version=v1.0 MSIISISSKPSFCLPNRFSLTENQQPQRVHALQRHSLCCELSSTTPPLRSNSDAILRKRMVEGRKISTVCSAVPVSTARNLQWISTIASIVLMLAKGTDV NKCLLVPLLALQAPAAVISWVKGEYGVWAAFMALVARLFFSLPGELELPFVALLLVILAPYQVLNLRWVDFELKCTRDVVLFHFVRQLMLDMLSRIQNDR GTQEGAIISVTIAAYLAFQHFSRDGNMQKSFEQGSIVSTAAIVCVAVTSCLLLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004599 [exp]	0	1
AT4G12290			Copper amine oxidase family pr...		Lus10024571 [exp]	2.0	0.5361
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	27.0	0.5053
					Lus10031576 [exp]	42.3	0.4645
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	78.1	0.4529
					Lus10031082 [exp]	92.9	0.4263
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10027305 [exp]	110.9	0.4468

Compare expression of checked genes

Lus10004599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.