Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46390 603 / 0 Peptidase S41 family protein (.1.2) AT3G57680 211 / 2e-62 Peptidase S41 family protein (.1) AT4G17740 209 / 8e-62 Peptidase S41 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004545 [exp] 722 / 0 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2) Lus10004402 [exp] 215 / 6e-63 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2) Lus10023704 [exp] 213 / 2e-62 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2) Lus10040494 [exp] 206 / 2e-60 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078700 [exp] 610 / 0 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2) Potri.008G173900 [exp] 227 / 3e-68 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2) Potri.006G055400 [exp] 206 / 2e-60 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1) Potri.010G063400 [exp] 84 / 5e-19 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [flax] [poplar] PDZ-like PF00595 [flax] [poplar] PDZ PDZ domain CL0127 [flax] [poplar] ClpP_crotonase PF03572 [flax] [poplar] Peptidase_S41 Peptidase family S41
Representative CDS sequence Show only first row Show all	>Lus10004601 pacid=23149774 polypeptide=Lus10004601 locus=Lus10004601.g ID=Lus10004601.BGIv1.0 annot-version=v1.0 ATGAAGACCTTACTCTGCAGCTGTTCAGCTACGCTGCCGTCGCCGGAGCTATACCCACGGCCACCGATTAGAAGATTCCCGAGCGTCCTTCTGGAGGCGG ATAGATTAGCTAAGAAAGCCGTGATAGGAATTCTCACCGGAGCTCTCTCTTTCAATTTACTGATCACTTCTCCAGCCGCGATCCCTTTGGATACTCCGAC CTTACAATTGCCGCCATCACCGGCGCCTCCTCCCTCCGAGTACTGCAGCGAAGAAGCAGCCGCAGCGGCGGAAGTAGTAGAAGCTCAACGATCGGGACTG CGGGTGGCGACGAACGAGAAGATTGTGGAGGAAGCGTGGGAGATCGTCAACGGCAGCTTCCTCGACGTCGCTCGACACCGATGGACGCCTGAAACTTGGC AGGGGAAGAAGGAAGATATCTTAAGCAGCTCCATTCAGTCAAGGTCCAAAGCTCACGAGATAATAAGAAGGATGCTGTCTAGCTTGGGAGATCCGTACAC TCGCTTCCTTACTCCTGCGGAGTTCTCGAGGATGGCGAGGTATGACATGACTGGAATTGGGATAAACCTCAGGGAAGTTGCAGGCGAGAATGGAGAAGTG AAACTTAGAGTGTTGGGTGTCTTACTGGATGGACCTGCAAATGCTGCTGGTGTGAGACAGGGAGATGAGATCCTGGCTGTAAATGGAGAGGAAGTTCAAG GGAAATCCGCGTTCGAAGTGTCATCTATGTTGCAAGGCCCGAACGAAACCTTCGTGACGATCAAGGTGAAGCATGGGAAATGTGGACCTGTTCAATCCCT AGATGTTCAGAGACAAGTTGTTGCGAAAACCCCTGTCTTCTACAGGTTGGAACAGATGGACAACGGCAGCATCGCTGTTGGCTATGTGCGGCTGAAAGAG TTCAACGCTTTGGCAAGAAAGGATTTGGTTATTGCGATGAAGCGGCTTCAAGACATGGGCGCTTCGTGTTTCATTCTGGATCTTAGAGATAACCGTGGTG GACTAGTCCAGGCGGGGATTGAAGTTGCCAAGCTCTTTCTAAATGAAGGAGAAACAGTAATTTATACAGCTGGGAGGGATTCCCAGTACCAGTCCACTGT AGTTGCAGCGACTGCCCCATTAGTCACCTCTCCTGTGATTGTGTTGGTTAACAGCAACACTGCAAGTGCAAGTGAGATTGTTGCCTCGGCACTCCACGAC AACTGTAAAGCGGTTCTCGTAGGAGAACGAACTTTTGGCAAGGGTTTGATTCAATCGGTTTTTGAACTCGACGATGGATCTGGAGTGGCTGTCACCGTCG GGAAGTACGTTACACCAAATCACATGGACATAAATGGAAATGGAATAGATCCGGACTATCGAAATCTCCCAGCGTGGGGTGATGTTAACCAACGGCTATC TCAATGCAAAATGCGACAGCAGGGATAA
AA sequence Show only first row Show all	>Lus10004601 pacid=23149774 polypeptide=Lus10004601 locus=Lus10004601.g ID=Lus10004601.BGIv1.0 annot-version=v1.0 MKTLLCSCSATLPSPELYPRPPIRRFPSVLLEADRLAKKAVIGILTGALSFNLLITSPAAIPLDTPTLQLPPSPAPPPSEYCSEEAAAAAEVVEAQRSGL RVATNEKIVEEAWEIVNGSFLDVARHRWTPETWQGKKEDILSSSIQSRSKAHEIIRRMLSSLGDPYTRFLTPAEFSRMARYDMTGIGINLREVAGENGEV KLRVLGVLLDGPANAAGVRQGDEILAVNGEEVQGKSAFEVSSMLQGPNETFVTIKVKHGKCGPVQSLDVQRQVVAKTPVFYRLEQMDNGSIAVGYVRLKE FNALARKDLVIAMKRLQDMGASCFILDLRDNRGGLVQAGIEVAKLFLNEGETVIYTAGRDSQYQSTVVAATAPLVTSPVIVLVNSNTASASEIVASALHD NCKAVLVGERTFGKGLIQSVFELDDGSGVAVTVGKYVTPNHMDINGNGIDPDYRNLPAWGDVNQRLSQCKMRQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	0	1
AT5G61040			unknown protein		Lus10021155 [exp]	1.0	0.9100
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	2.4	0.8466
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	3.9	0.8395
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	5.0	0.8152
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	5.1	0.8282
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	5.2	0.8322
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	5.3	0.8407
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	5.7	0.8452
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	7.5	0.8203
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	9.2	0.8370

Compare expression of checked genes

Lus10004601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.