Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 313 / 2e-97 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT4G00990 287 / 4e-89 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 251 / 2e-75 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 249 / 9e-75 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 169 / 1e-45 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 135 / 3e-34 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027890 [exp] 581 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 556 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 470 / 3e-158 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 423 / 5e-142 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 248 / 8e-74 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10017092 [exp] 191 / 3e-53 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 189 / 1e-52 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002051 [exp] 184 / 8e-52 AT3G07610 172 / 1e-44 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004549 [exp] 164 / 3e-44 AT3G07610 173 / 8e-49 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 400 / 2e-129 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 382 / 9e-122 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.015G012800 [exp] 283 / 5e-85 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 252 / 8e-75 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G006200 [exp] 238 / 8e-70 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 205 / 2e-58 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 195 / 1e-55 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 184 / 4e-51 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 161 / 4e-43 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004602 pacid=23149766 polypeptide=Lus10004602 locus=Lus10004602.g ID=Lus10004602.BGIv1.0 annot-version=v1.0 ATGGACGGTGATAGAAGCGCTGAAATTGAGATACTTCACGAAATACCTAAGGAATGCGAACGACCATGTCAGTCATCTAATCGAAAAACTAGTCATCATG TTACACTGCCTGTTTCTGACCCAGAGGTTACGTCGGATCTGGAACCTAAATCTGGTTGGAAAGCGAATGGAGATGGTGGCATTACTTGTGCTTGTGGTTC TGATATTTTAAATCTCAAAACTCTGTATTCTGGTAATTGGGTCTCAAAGTTGGTGGAGAGAGCAGAATGCCTTGTTAAAGGTTTTGTGGATATTTCGGAT GCACCACAAAATAAATGTGCATGCTTTAGTTCCAACGGAGATCTGGAAGTTCAATGTGATAAGTTAATAGAGGCTGCATCTCACAATGACTCGCATGATA ATTATTTGTTCTATCCAAAGGCTAAGAATTTGACAGAAGAAGATTTTGATCATTTCCGTCTCCATTGGATGAAAGCTGAACCTGTCCTCGTCAGCTATGT GCTTGAAACTGGGTCTGGGTTTAGCTGGGAGCCTTCGGTTATGTGGCGTGCCTTCCGCCAAATAAAGCACGAGAAACATGCTACGCTCTTGGATGTGAAG TTGCTAGATTGTTTGGATTGGTGCGAGAAGGATGTTAATATTTCCAAGTTCTTTAACGGATACTCAAATGGTGATTATGACGAGTTAGAGTGGCCGCGGA TTCTGAAGCTTAAAGACTGGCCACCATCTGCTATGTTCCATGAACGTTTGCCGCGGCATGGTGTCGAGTACACCTGTTGTTTGCCCTTTAAAGAGTATAC TCATCTTGATAAAGGACTTCTGAATCTTGCATCTAAGCTTCCCCCAAAGTCTCTGACGCCCGACATGGGGCCAAAGGCATATATAGCTTATGGGTTCCCT CATGAGCTTGGGCGTGGGGACTCTGTTACTAAGCTCCATTTTGACAAGTCTGATGCGGTAAATATTTTGGCACATACGACTAAAATCGAGTACAAAAGCT ATTTTCTTGCTAATATAGAAAAAATGAAAAGACAGCATTTTGAGCAAGACATAAGGGAGTTATATGGTATTGATGCATCTATGGATGGGGTTGATGACAA GAACGATAGCAATGAAGCGGAGACTCAGACGAAAAGGACCAAGTCTAATGAAGCGTTGAACAGTTTGGAGACGACAGTGGGAAGGATCGAGTGTGAGGAT GCACAGAACTATTTTGATTTTGATTTTTGA
AA sequence Show only first row Show all	>Lus10004602 pacid=23149766 polypeptide=Lus10004602 locus=Lus10004602.g ID=Lus10004602.BGIv1.0 annot-version=v1.0 MDGDRSAEIEILHEIPKECERPCQSSNRKTSHHVTLPVSDPEVTSDLEPKSGWKANGDGGITCACGSDILNLKTLYSGNWVSKLVERAECLVKGFVDISD APQNKCACFSSNGDLEVQCDKLIEAASHNDSHDNYLFYPKAKNLTEEDFDHFRLHWMKAEPVLVSYVLETGSGFSWEPSVMWRAFRQIKHEKHATLLDVK LLDCLDWCEKDVNISKFFNGYSNGDYDELEWPRILKLKDWPPSAMFHERLPRHGVEYTCCLPFKEYTHLDKGLLNLASKLPPKSLTPDMGPKAYIAYGFP HELGRGDSVTKLHFDKSDAVNILAHTTKIEYKSYFLANIEKMKRQHFEQDIRELYGIDASMDGVDDKNDSNEAETQTKRTKSNEALNSLETTVGRIECED AQNYFDFDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	0	1
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	6.3	0.6993
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	10.0	0.6537
AT5G25250			SPFH/Band 7/PHB domain-contain...		Lus10001944 [exp]	10.8	0.6678
AT1G68260			Thioesterase superfamily prote...		Lus10031936 [exp]	13.3	0.5785
					Lus10011276 [exp]	14.6	0.6571
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10013099 [exp]	16.1	0.6219
AT1G64160			Disease resistance-responsive ...		Lus10028749 [exp]	18.0	0.5881
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10025375 [exp]	18.4	0.5834
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015865 [exp]	19.1	0.5671
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	19.4	0.6309

Compare expression of checked genes

Lus10004602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.