Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 496 / 6e-163 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 491 / 4e-161 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 280 / 5e-82 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 77 / 2e-14 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 57 / 4e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 53 / 9e-07 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT1G22080 43 / 0.0007 Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004543 [exp] 1313 / 0 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 854 / 0 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 767 / 0 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 394 / 5e-129 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 84 / 2e-16 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 59 / 2e-10 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 61 / 4e-09 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 61 / 5e-09 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 61 / 5e-09 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078800 [exp] 829 / 0 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 811 / 0 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 211 / 1e-56 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 113 / 9e-26 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 64 / 4e-10 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 64 / 5e-10 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 62 / 1e-09 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 60 / 8e-09 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10004604 pacid=23149761 polypeptide=Lus10004604 locus=Lus10004604.g ID=Lus10004604.BGIv1.0 annot-version=v1.0 ATGAGTGGTAAAGGCGGCGGCGGCGAGAGGAACCCTGGCGGAAAAGGTGGTAATGGAATCTCCGCTATACCTGCCGGCTCCAGGAAGGTAGTCCAGAGCT TGAAAGAGATTGTCAACTGTCCTGAGGTGGAGATCTACGCTACGCTTAAGGAGTGTAACATGGACCCTAATGAAGCCGTTAATCGACTCCTTACTCAAGA TCCTTTCCGTGAAGTTAAGAGCAAGCGAGAGAAGAAGAAAGAGAATAAGGATACGACAGACTTCAGGCCCCGTGGTACAAATAACGTAACACATCGTGGC GGCAGGGGTGCCTCAGACCGCTATGCCTCAGATCGGTATGGGCGTGGTGGATCAAGCAATTTTGCCTCAGCTGAATCTGGTGGTATGCATAGTAAGCCTG CTTACAGGAAGGAAAATGGAGCACATGCTTATGCGGGTTCTACCTCTTATGCATCTGCCACTGCAGGAAGCCAAGGTGGACGACGAGCTCAATATACCAG TGACTATGTAAATGCTGAAAATAAAACACCAACAGTAAGTGTAGGTGATGGGGTTTCTTCGTCAGTACAGCCTACCATTGGATTTCAATCTGCATGGATT GGGGTTCCAGGTCAAAAATCTATGGCAGATATTGTGAAAATGGGGAGGCCTCAGGCTAAGGCAGCCTTACCCAACCACACTGCTATTGAACAGCATGAAT GGGCACCTCTTCCATCTGAACACAATGCTCTCAAGGTGCCAGAAATGCGGAGCGACGTAGAAGCTTCTGAAAATCAGCATGCTTATTCCAATAATAAATG GCCATCATTTGAGCAACCATCTGGTGCTAACGTGTCATTCTTTAAGGAGGCACTTTCAGAGCCTGAGTTGTATGAAAACCCATCAAGTGTAGCTACAAAT GCAGAACCTGAGAATGTAAGGTCTGAGATCGATGACGTTGAATCTGATGAGGACGAAACTCTTGATGAGAGGCAAGTTGAGCTACCGTCCATGTCCAGTA GACAGATCCAAGAGGACAGTACTGGAGGTTCCTCCTTATTTGACAATGATCAATACGAGAATATTAGCTCCTACCAGTCTCACAGACAGCCTTTTGAGCA TAATGAAGCTGAAGACAGCTCTTCATCTGTGGCTGCAAATTTACAGCAATTGAGCTTACAGAATGATGATAAGGTGGTACCACCTGAAGAAGATAGCCCT GTTGTAATTATTCCAAATCATCTACAAGTTAATGCTCAAGACTGTTCACACTTGAGTTTCGGCAGCTTTGCCTCTGCCAGGAATTCAGGTTTGTCAGAGC CATTTGCATCTAGGCCCTTAGAAGATAACTTGGATGAGACGCCTGAACCGGTGGAAGCCCCATCAGCAGGGCACTCGGATGCTAGAGATGCTGATTACTA TGTGGATGAGCATCTAAGGAATGCCGCTGAAGATAATTTAGTCCATAGAACAAGTATAAATGCTGGGAACTATGAGTCTCCTTCAGTTCCTCAACCGCAA GTTTTGAAGGAGGAAACAGAGGAAGCTGCTCAGGGAAATCAATATGCCTATGCTTCTACGCCTGGATATAACTATGAGAACACTCAGAACTTGGATGCTG CTTTTAACAGTCAACAACAAAGCTCTCAGATGCAGAATATGGCTGCCTTCTCAAGTGTAATGCAGGCGTATTCGAATGCGTTGCCTAGTGCATTGTTGGC TTCAAATATGCCAACTGGGAGGGAGCCTGACCTTCCATATTCGCCTTTCCCGGCTACTCAATCTATGCCTACAAAGTACGGCACCAGTGCCTCATCTATT AGTGGTCCAAGCATGTCCATGCCAGAGGCTTTGAGAGCATCCAGCATTTCGACACCTCAGCAACAGCAAGCCCAGCAATCACTTGGCGGTGCTGGCGTCG CCACGGGGCCTGCTCTTCCTCAACACCTTGTCCATCCGTACTCACAACCTACGGTTCCCTTGGGCCATTACGCTAACATGATTAGCTATCCGTTCATGCC TCAAAGCTATGCATATATGCCATCAGCCTTCCAGCAAGCCTTCGCAGGCAATAACACGTACCATCAGTCTATGGCGGCCGTTCTCCCTCAGTACAAGAAC AGTGTTTCCGCAAGTAGCTCACCCCAGTCTGCTGCTGTTCCACCTGGCTATGGGTTTGGGAATTCGACGAGCATCCCTGCTGCGAATTTCCCTGTTAACC AACCCGCTGCCCCAGCCGGCACAACTCTTTCGTATGACGATATGTTGAGTTCCCAGTACAAGGATAACAGCCATTTGATGTCTCTGCAACAGAACGAGAA CTCGGCCATGTGGCTTCAGGGGCACGGTTCAAGGGCCATGTCAGCAGTCCCGGCGAACTCATACTACAACTTCCAAGGGCAGCAGAACCAGCAGCAACAG CAGCAGCTGTCGGGGTTCCGTCAAGGCCAGCAACAGCAACCGTCCCAGCAGCAGCATTTCGGCGGTGCTCTAGGGTACCCTAACTACTACCATTCCCAGG CAGGCATTTCGATGGATCATCTTCAGCAGCAGCAGCAGCAGCAGCAAATGCAACAGCAGAACACAAGGGACGGATCCCTAATCAATGCTCAGCAAGGCCA GGGCCCGAAGCAGAACCAACAGCAGCTATGGCAAAACAGTTACTGA
AA sequence Show only first row Show all	>Lus10004604 pacid=23149761 polypeptide=Lus10004604 locus=Lus10004604.g ID=Lus10004604.BGIv1.0 annot-version=v1.0 MSGKGGGGERNPGGKGGNGISAIPAGSRKVVQSLKEIVNCPEVEIYATLKECNMDPNEAVNRLLTQDPFREVKSKREKKKENKDTTDFRPRGTNNVTHRG GRGASDRYASDRYGRGGSSNFASAESGGMHSKPAYRKENGAHAYAGSTSYASATAGSQGGRRAQYTSDYVNAENKTPTVSVGDGVSSSVQPTIGFQSAWI GVPGQKSMADIVKMGRPQAKAALPNHTAIEQHEWAPLPSEHNALKVPEMRSDVEASENQHAYSNNKWPSFEQPSGANVSFFKEALSEPELYENPSSVATN AEPENVRSEIDDVESDEDETLDERQVELPSMSSRQIQEDSTGGSSLFDNDQYENISSYQSHRQPFEHNEAEDSSSSVAANLQQLSLQNDDKVVPPEEDSP VVIIPNHLQVNAQDCSHLSFGSFASARNSGLSEPFASRPLEDNLDETPEPVEAPSAGHSDARDADYYVDEHLRNAAEDNLVHRTSINAGNYESPSVPQPQ VLKEETEEAAQGNQYAYASTPGYNYENTQNLDAAFNSQQQSSQMQNMAAFSSVMQAYSNALPSALLASNMPTGREPDLPYSPFPATQSMPTKYGTSASSI SGPSMSMPEALRASSISTPQQQQAQQSLGGAGVATGPALPQHLVHPYSQPTVPLGHYANMISYPFMPQSYAYMPSAFQQAFAGNNTYHQSMAAVLPQYKN SVSASSSPQSAAVPPGYGFGNSTSIPAANFPVNQPAAPAGTTLSYDDMLSSQYKDNSHLMSLQQNENSAMWLQGHGSRAMSAVPANSYYNFQGQQNQQQQ QQLSGFRQGQQQQPSQQQHFGGALGYPNYYHSQAGISMDHLQQQQQQQQMQQQNTRDGSLINAQQGQGPKQNQQQLWQNSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	0	1
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	3.2	0.8881
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	4.0	0.9021
AT5G06590			unknown protein		Lus10021091 [exp]	4.2	0.8999
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	4.2	0.8792
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	4.5	0.9128
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	5.5	0.9002
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	5.7	0.9075
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	6.2	0.8854
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	7.7	0.8685
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	7.9	0.8767

Compare expression of checked genes

Lus10004604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.