Plant FIBer expression Database

Lus10004605 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29820 699 / 0 Magnesium transporter CorA-like family protein (.1.2)
AT1G29830 650 / 0 Magnesium transporter CorA-like family protein (.1.2.3)
AT2G42950 601 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004542
[exp]
204 / 9e-64 AT1G29820 169 / 2e-51 Magnesium transporter CorA-like family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G353000
[exp]
710 / 0 AT1G29820 713 / 0.0 Magnesium transporter CorA-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01544 CorA CorA-like Mg2+ transporter protein
Representative CDS sequence
>Lus10004605 pacid=23149756 polypeptide=Lus10004605 locus=Lus10004605.g ID=Lus10004605.BGIv1.0 annot-version=v1.0
ATGACCAGTAGCGGCGTCGCTGAACAAACGGTGGAAGATAACGATAGCAAGATGAGGAATCCGGATTCTACGCACGCAAGGAATCAGAGCAGAGCAGAAG
TAGTCTCCGGTACTGATCTGTGGACCGACGGTCTAATCTGCGCGTTCGAGTACATTCGCGGCCGACGGCGAGGGAACAGTGTCAGGTCTCCTTCCAAATT
TCCTCCCCGATCGGTCGACGGGGACCGGTTACCGCCGCACTACCAAGCAAACGACGGCGCGGTCGACGGTTTACCGAGTGATTCTTCGATTTTGGACGAC
TCTCGAGCTGATGGCTATAGAGATGGCCACGCGCAGCAGTTTGATGATAGTCATTGGGTGCCGATTGGCTGGAACAGGATTTCGGAGCTTGTTCAGAATG
TGCAGGTAAATGATGGCTGGGCGACTCAGCAGCTCGAGTTGATCGACTCTGAAGCTGATATCACGGTTGCAGACTTAGCAGCTCCTTACTGGGAGAGACC
TGCTGGGCCAATGTGGTGGTGCCACGTTGATGCCGGCCATCGCTCCGTCCAGATGTGGCTCAACGGTGCTCAGTGGTTGCATCCGGCAATCAGTCTTGCT
TTGCGCGACGAAAGCAGACTGATTAGCGAGAAGATGAAGCACTTGCTTTACGAAGTCCCGGTGAGAGTTGCCGGAGGGCTGCTGTTTGAGCTCTTGGGAC
AATCAGCAGGCGATCCATTTGACGACGAGGATGACATTCCGGTTGTACTGCGCTCTTGGCAAGCACAAAACTTCTTAGTAACTTCACTCCATGTGAAAGG
TCAAGTCTCCAGGATAAATGTTTTGGGACTCACCGAAGTCCAGGAGCTTCTCTCGGCTGGAGGTTATAATGCACCTAGAACGGTGCATGAAGTCATATCC
CAACTTGCTTGCCGCTTGACTCGCTGGGATGACAGGCTGTTTCGCAAGTCCATCTTTGGAGCGGCAGATGAAATTGAGCTGATGTTCGTGAACAGGAGAA
ATCATGAAGATATGCATCTATTTGGTATCATCCTGAACCAAGAAATTCGAAAGTTGTCACGACAGGTTATCAGAGTAAAATGGTCGCTACACGCGAGAGA
AGAGATCATCTTCGAGCTCATTCAGCATTTGAAAGGAAATGCAGCAAGATCATTGCTAGACCAAATAAGAAAGAACACCCGTGAAATGATCGAGGAGCAG
GAAGCTGTTCGAGATCGCTTATTCACCATCCAAGACGTCATGCAAAGCACCGTGAGGGCATGGCTACAGGATAGAAGCCTCCGAGTGACGCACAACCTAG
CCGTTTTTGGAGGATGCGGTCTCGTTCTCTCTATCATCACAGGCTTATTCGGGATCAACGTGGACGGAATCCCAGGATCGTCCAGCACCCCCTACGCATT
CGGCCTCTTCACCGTAATCCTCTTCGCCATAGGCATTGTGCTGATCGTGGTCGGGCTATTGTACCTCGGGTTGAAGAATCCCGTCAACGAGGAGCAAGTC
GAGGTGAGGAAGATGGAGCTAGACGAGCTGGTGAAGATGTTCCAGCACGAGGCCGAGACTCATGGCCAAGTTCGAAACAAAGGTAGGGCTCGGACTAACT
TGACCCCAACCACCGGAGACAAGTTCTCCGACGACATAGATTACGTTCTTATCCCGTGA
AA sequence
>Lus10004605 pacid=23149756 polypeptide=Lus10004605 locus=Lus10004605.g ID=Lus10004605.BGIv1.0 annot-version=v1.0
MTSSGVAEQTVEDNDSKMRNPDSTHARNQSRAEVVSGTDLWTDGLICAFEYIRGRRRGNSVRSPSKFPPRSVDGDRLPPHYQANDGAVDGLPSDSSILDD
SRADGYRDGHAQQFDDSHWVPIGWNRISELVQNVQVNDGWATQQLELIDSEADITVADLAAPYWERPAGPMWWCHVDAGHRSVQMWLNGAQWLHPAISLA
LRDESRLISEKMKHLLYEVPVRVAGGLLFELLGQSAGDPFDDEDDIPVVLRSWQAQNFLVTSLHVKGQVSRINVLGLTEVQELLSAGGYNAPRTVHEVIS
QLACRLTRWDDRLFRKSIFGAADEIELMFVNRRNHEDMHLFGIILNQEIRKLSRQVIRVKWSLHAREEIIFELIQHLKGNAARSLLDQIRKNTREMIEEQ
EAVRDRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGIPGSSSTPYAFGLFTVILFAIGIVLIVVGLLYLGLKNPVNEEQV
EVRKMELDELVKMFQHEAETHGQVRNKGRARTNLTPTTGDKFSDDIDYVLIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29820 Magnesium transporter CorA-lik... Lus10004605
[exp]
0 1
AT5G51970 GroES-like zinc-binding alcoho... Lus10027409
[exp]
9.0 0.9040
AT3G22142 Bifunctional inhibitor/lipid-t... Lus10010479
[exp]
17.0 0.8917
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Lus10031361
[exp]
23.2 0.8816
AT4G28360 Ribosomal protein L22p/L17e fa... Lus10006865
[exp]
23.9 0.8889
AT1G11320 unknown protein Lus10013574
[exp]
29.4 0.8880
AT5G59380 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.... Lus10005460
[exp]
32.4 0.8878
AT4G05390 ATRFNR1 root FNR 1 (.1.2) Lus10038538
[exp]
32.5 0.8887
AT3G19130 ATRBP47B RNA-binding protein 47B (.1) Lus10019889
[exp]
32.7 0.8782
AT3G17910 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 31... Lus10031907
[exp]
34.6 0.8845
AT1G27340 Galactose oxidase/kelch repeat... Lus10037030
[exp]
36.5 0.8822

Lus10004605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.