Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33520 339 / 2e-112 MOS2 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) AT4G25020 168 / 1e-47 D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004541 [exp] 805 / 0 AT1G33520 381 / 9e-129 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Lus10005161 [exp] 44 / 0.0002 AT1G55460 596 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129700 [exp] 388 / 1e-131 AT1G33520 345 / 9e-115 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.003G104200 [exp] 375 / 1e-126 AT1G33520 339 / 2e-112 modifier of snc1, 2, D111/G-patch domain-containing protein (.1) Potri.010G204900 [exp] 48 / 1e-05 AT1G55460 561 / 0.0 DNA/RNA-binding protein Kin17, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10004607 pacid=23149777 polypeptide=Lus10004607 locus=Lus10004607.g ID=Lus10004607.BGIv1.0 annot-version=v1.0 ATGAAACTGTCATTCTCGATCCCCGGGAAATCTTCAGCCAAGTCTACTACGGCTAAGCCCGTACTTGCTGCAGAAGAGGGAGAACGTGAGGAGAAACAGA GGGAGTTTGTGACGGAGTTTGATCCCTCGACTTCCCGTGTTTCAAAAAAGAGGCCGAGCTATGTAATTCCTCCCAAGGAGAATGAATGGAGGCCTCACAA GAGTATGAAGAACATCCACAACCTTGCATCTCTGGGATATGATAAATCAAACGATGACAACATCAGCTTCGAAGTAGCCGGTGACATGGCCGATGGAAGT GGCGGCAACGTGTCTTATGGGCTTACCGTTCGTCAGAGTGAAGATGGTGCGGCTTCTAATGATGGTAGCGGTAGTATATCTGCAAGACCAAGCACTGACA ACATGCTTTTGGAGAAGCTGAAGTTTGATTTACATCGGCTTCCTGACGACCAAGGGTTCAAGGAGTTTGAGGATGTTCCGGTTGAAGGGTTCGGTGCAGC CTTACTTGCTGGTTATGGATGGAAAGAAGGAAGAGGTATTGGCAAGAACGCCAAGAACGATGTTGAAGTGAAGCAATATCACAAGAGAACAGGTAAAGAA GGACTAGGGTTTACTGCCACTGACTCTGAAATGATTAATGTCAAAGATAAGCAGAAGGAGAAAGGTGGAAACAAAGAGAAACATAGGGATAGAGATCGAA ATTCTGAAGACGGGTTTCCTGTTGGTAAAATTGTGAGGGTGGTTGCTGGTTCGAGAGACGTTTTAGGTTTCAAAGCTACAGTCTTGGAGAGAGTAGGTAG CGATTGGCTGCGTCTGAAGCTTGCAAGAACTGGCAAGGAAGTTGGGATTCCTGTTTCCGACGTAGCAACTTTGGGCTCCGTAGAAGAAGACAAGTGCTTG AAGAAACTGAAAGAGCTGAAGATTCGAAGTGAAGAACGATCAAACAGTGGAAAGAGTGGAAAAGAGCACTCTAGAGGAACTGAGAAGAGAGATGTTGATA GAGTAAAGGTGGAGAAAGAGAGAGGGCCTCGATGGCTAAGGAACCACATTCGGGTTAGGATCATAAGCAAAGACTTGAAGGGTGGCAGACTCTACTTGAA GAAAGCGGAAGTGGTCGACGTCGTGGGACCATACGTGTGCGACGTCTCGATGGACGAAAGTAGGGAGCTTGTGCAAGGAGTTGACCAAGACCTTCTCGAG ACGGCATTGCCTCGTAGCGGGGGTCCGGTTCTAGTTCTTTATGGCAAACACAAGGGGGCGTATGGGAAGCTGGTGAAAAGGGATTTGGATGAGGAGACTG CAGTTGTGCAGGATTTCGATACCCACGAATTCGTCAACGTCAAACTTGAGCAAATTGCAGAGTATATCGGAGATCCAAGTGATATTGGATATTGA
AA sequence Show only first row Show all	>Lus10004607 pacid=23149777 polypeptide=Lus10004607 locus=Lus10004607.g ID=Lus10004607.BGIv1.0 annot-version=v1.0 MKLSFSIPGKSSAKSTTAKPVLAAEEGEREEKQREFVTEFDPSTSRVSKKRPSYVIPPKENEWRPHKSMKNIHNLASLGYDKSNDDNISFEVAGDMADGS GGNVSYGLTVRQSEDGAASNDGSGSISARPSTDNMLLEKLKFDLHRLPDDQGFKEFEDVPVEGFGAALLAGYGWKEGRGIGKNAKNDVEVKQYHKRTGKE GLGFTATDSEMINVKDKQKEKGGNKEKHRDRDRNSEDGFPVGKIVRVVAGSRDVLGFKATVLERVGSDWLRLKLARTGKEVGIPVSDVATLGSVEEDKCL KKLKELKIRSEERSNSGKSGKEHSRGTEKRDVDRVKVEKERGPRWLRNHIRVRIISKDLKGGRLYLKKAEVVDVVGPYVCDVSMDESRELVQGVDQDLLE TALPRSGGPVLVLYGKHKGAYGKLVKRDLDEETAVVQDFDTHEFVNVKLEQIAEYIGDPSDIGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	0	1
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	1.4	0.9012
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009943 [exp]	3.5	0.8813
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	3.7	0.9034
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	4.0	0.8781
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	4.5	0.8932
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	5.5	0.8884
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	7.3	0.8935
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	8.5	0.8768
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005159 [exp]	8.7	0.8382
AT1G31870			unknown protein		Lus10033140 [exp]	10.9	0.8795

Compare expression of checked genes

Lus10004607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.