Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29630 478 / 8e-164 5'-3' exonuclease family protein (.1.2.3) AT1G18090 250 / 3e-77 5'-3' exonuclease family protein (.1.2) AT5G26680 88 / 7e-19 5'-3' exonuclease family protein (.1.2) AT3G28030 67 / 1e-11 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT2G02550 53 / 2e-08 PIN domain-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002782 [exp] 584 / 0 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 569 / 0 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 231 / 2e-70 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10038958 [exp] 141 / 5e-38 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10000270 [exp] 77 / 3e-15 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 68 / 6e-12 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10041375 [exp] 53 / 3e-07 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 44 / 0.0001 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077001 [exp] 494 / 3e-170 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.015G041400 [exp] 253 / 1e-78 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 86 / 2e-18 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 66 / 4e-11 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.014G077300 [exp] 46 / 4e-05 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004608 pacid=23149770 polypeptide=Lus10004608 locus=Lus10004608.g ID=Lus10004608.BGIv1.0 annot-version=v1.0 ATGGGGATACAGGGGCTTTTGCCCCTTCTGAAGTCTACGATGCATTCGATCCACGTTAAAGACTTACAAGGCGGTTCCATCGCCGTTGATACCTACTCCT GGCTTCACAAAGGTGCACTTTCTTGTAGCACTCAGCTCTGCAAAGGACTGCCCACTCCATGGCACATTGAGTACTGTATGCACAGGTTGAATTTGCTGAG GCATTATGGTGTTAAACCTGTTCTCGTCTTTGATGGAGGCTTTCTGCCTATGAAGCTTGAACAAGAGAACAAACGTGCAAGGTCAAGAAAGGAAAACCTT GCTCGTGCTATTGAGCATGAGTCAAACAGGAACTCGACTGCAGCTTACGAGTGCTACCAGAAGGCTGTTGACATATCGCCTTCTATCACTCATGATCTGA TCCAGGTCTTGAAGCAGGTGAATGTGCCGTATGTTGTAGCTCCTTATCAGGCGGATGCGCAGATGACATTCATGGCGTTAAATAAGCAAGTGGATGCAGT TATCACCGAGGACTCGGATCTCATAGCATTTGGATGCCCTAGGATCATATTCAAAATGGACAAGTATGGGCAAGGTGTCGAGTTTCAGCTTTCCCGGCTT CAGAAGAACAAGGAATTATGTTTCGCTGGATTCACTAACCAAATGGTTTTGGAGATGTGCATTTTGAGTGGCTGTGACTATTTGCAGTCACTACCTGGAA TGGGCTTGAAAAGGGCGCATTCATTAATCTCGAAGTTTAAAACTTATGAGAAGGAAAGCGATACTACTTTCCAGCACCAACGAGTGTATGATCCTATTGC TGAAGATATTTTGCATTTGTCTGACGTCCCGGAAAGTCAGGATGGTGATGTGGTCAAAGGTATTGCGGCTAGCGATTTGGATCCATTTACTCAGACGCCA TTCCAGAAGAAGTTAACACTGTTACCAGAACTTGGATATTCCGTAAACTTTGGCTCAGTGAGGGTTTCCATCTGCATGAACAGAGTTGTAACTCGGTCCA ATGGCGATAAGTTGAGCGTGACAAACGAAAAGGCTAGAGTGACCAGTCCTTATTTTGCACGAAATCCATCTCCGGACAGTTCCTTTCAAGGGAATGTAGA CAGTCACAGAGAAGATGAAACCACATTTCAAGACGATGAAAAGAGTTCTAGTGAAGTTACTTTGAAAAGGAAGACTGCCCTGATTGACAGGTTTCCAACC GCATATATTATTGATACGAGAACTCATGAGTCGAGATGA
AA sequence Show only first row Show all	>Lus10004608 pacid=23149770 polypeptide=Lus10004608 locus=Lus10004608.g ID=Lus10004608.BGIv1.0 annot-version=v1.0 MGIQGLLPLLKSTMHSIHVKDLQGGSIAVDTYSWLHKGALSCSTQLCKGLPTPWHIEYCMHRLNLLRHYGVKPVLVFDGGFLPMKLEQENKRARSRKENL ARAIEHESNRNSTAAYECYQKAVDISPSITHDLIQVLKQVNVPYVVAPYQADAQMTFMALNKQVDAVITEDSDLIAFGCPRIIFKMDKYGQGVEFQLSRL QKNKELCFAGFTNQMVLEMCILSGCDYLQSLPGMGLKRAHSLISKFKTYEKESDTTFQHQRVYDPIAEDILHLSDVPESQDGDVVKGIAASDLDPFTQTP FQKKLTLLPELGYSVNFGSVRVSICMNRVVTRSNGDKLSVTNEKARVTSPYFARNPSPDSSFQGNVDSHREDETTFQDDEKSSSEVTLKRKTALIDRFPT AYIIDTRTHESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	0	1
AT5G52950			unknown protein		Lus10027565 [exp]	8.8	0.7692
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	10.1	0.6699
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	12.7	0.7512
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	13.2	0.7494
					Lus10018953 [exp]	16.2	0.7246
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	20.6	0.6989
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	22.0	0.6777
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	29.8	0.7336
AT2G37050			Leucine-rich repeat protein ki...		Lus10015057 [exp]	30.8	0.7226
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	31.4	0.7260

Compare expression of checked genes

Lus10004608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.