Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29850 186 / 7e-62 double-stranded DNA-binding family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004540 [exp] 221 / 6e-75 AT1G29850 197 / 1e-65 double-stranded DNA-binding family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352600 [exp] 189 / 3e-63 AT1G29850 205 / 1e-69 double-stranded DNA-binding family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01984 [flax] [poplar] dsDNA_bind Double-stranded DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004609 pacid=23149775 polypeptide=Lus10004609 locus=Lus10004609.g ID=Lus10004609.BGIv1.0 annot-version=v1.0 ATGGTGTTAGGTTTCACTTTGCGCTCGCGTTTTCCGGCTGACCCGGAGCTGGAAGCAATTCGACAGAGGAGGATGCAGGAGCTAATGGCTCAACGTGGCG CAGCGGGAAGTCACTCTAGTCAGCATAACCCTGAACAACAGAAAGCTCAAGATGATGCTAAGAGGGAGGCCGAAGAGCGTAGGCAGATGATGTTGAGCCA GATCGTATCTGCTGAAGCCCGAGAGAGAATTGCTAGAATAGCGTTGGTTAAACCTGAAAAGGCCAGAGGCGTTGAAGACGTTATCCTCAGAGCTGCTCAA ATGGGTCAGATAGCTGAGAAGGTTTCGGAAGAGAGGCTTATCTCATTGCTGGAGCAGATAAACACCCAAACATCGAAACAAACCAAAGTCACAATTCAGA GGCGTCGAAGTGTTCTAGACGACGATGACTGA
AA sequence Show only first row Show all	>Lus10004609 pacid=23149775 polypeptide=Lus10004609 locus=Lus10004609.g ID=Lus10004609.BGIv1.0 annot-version=v1.0 MVLGFTLRSRFPADPELEAIRQRRMQELMAQRGAAGSHSSQHNPEQQKAQDDAKREAEERRQMMLSQIVSAEARERIARIALVKPEKARGVEDVILRAAQ MGQIAEKVSEERLISLLEQINTQTSKQTKVTIQRRRSVLDDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	3.7	0.8782
AT2G44850			unknown protein		Lus10028204 [exp]	4.9	0.8426
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	6.6	0.8401
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	7.3	0.8509
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	8.1	0.8215
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	10.2	0.8314
AT5G11500			unknown protein		Lus10038625 [exp]	19.2	0.8257
AT5G53940			Yippee family putative zinc-bi...		Lus10015416 [exp]	21.0	0.8066
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	24.4	0.8319
AT4G04614			unknown protein		Lus10014685 [exp]	24.9	0.7930

Compare expression of checked genes

Lus10004609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.