Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03000 228 / 2e-77 EF hand calcium-binding protein family (.1) AT1G32250 205 / 3e-68 Calcium-binding EF-hand family protein (.1) AT1G18530 126 / 2e-37 EF hand calcium-binding protein family (.1) AT3G25600 123 / 4e-36 Calcium-binding EF-hand family protein (.1) AT5G37780 110 / 2e-31 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 110 / 2e-31 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G43810 109 / 6e-31 CAM7 calmodulin 7 (.1) AT5G21274 108 / 2e-30 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41110 108 / 2e-30 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 108 / 2e-30 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004539 [exp] 207 / 4e-70 AT3G03000 164 / 2e-53 EF hand calcium-binding protein family (.1) Lus10030986 [exp] 179 / 4e-58 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10017900 [exp] 124 / 2e-36 AT3G25600 252 / 4e-87 Calcium-binding EF-hand family protein (.1) Lus10035383 [exp] 117 / 5e-34 AT1G32250 152 / 8e-48 Calcium-binding EF-hand family protein (.1) Lus10027283 [exp] 109 / 7e-31 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 109 / 7e-31 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 109 / 7e-31 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 109 / 7e-31 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10039391 [exp] 101 / 1e-27 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095700 [exp] 224 / 5e-76 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.001G138000 [exp] 218 / 2e-73 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.010G132800 [exp] 128 / 4e-38 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.015G052600 [exp] 126 / 2e-37 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.006G026700 [exp] 109 / 6e-31 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 109 / 6e-31 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 109 / 6e-31 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 108 / 2e-30 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.012G041000 [exp] 107 / 5e-30 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 107 / 9e-30 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10004610 pacid=23149773 polypeptide=Lus10004610 locus=Lus10004610.g ID=Lus10004610.BGIv1.0 annot-version=v1.0 ATGAGCAGTGAGAAGGAACCGGCCCCGAAGAAGCTAGACGACGAACAACTGGGCGAGCTCCACGAAATATTCCGATCGTTCGACCGAAACAAAGACGGTA GCCTGACTCAGCTCGAGCTCGGGTCGTTACTCCGGTCTTTGGGGCTAAAGCCGAGCGAGGACCAGCTCGATCGGATGATCCACAAGGCGGACACGAACAA CAACGGCCTGATCGAATTCTCGGAATTCGTGGCCCTGGTGGAACCCGACCTCGTCAAGTCGAAATGCCCCTACACGGAGGAACAGCTGAGGCAGATGTTC ACATTGTTCGACAGGGACGGGAACGGGTTCATCACCGCGGCCGAGCTGGCCCACTCGATGGCCAAGCTCGGCCACGCGCTGACCGCGGCCGAGTTGACCA GCATGATTCGGGAGGCGGACGGGGATGGGGATGGGTGCATTAGCTTTCAGGAGTTTGCCAAGGCCGTTACTTCCGCTTCTTTTGACAATTTTTGGTGCGG ACACACCGGCCGTTAA
AA sequence Show only first row Show all	>Lus10004610 pacid=23149773 polypeptide=Lus10004610 locus=Lus10004610.g ID=Lus10004610.BGIv1.0 annot-version=v1.0 MSSEKEPAPKKLDDEQLGELHEIFRSFDRNKDGSLTQLELGSLLRSLGLKPSEDQLDRMIHKADTNNNGLIEFSEFVALVEPDLVKSKCPYTEEQLRQMF TLFDRDGNGFITAAELAHSMAKLGHALTAAELTSMIREADGDGDGCISFQEFAKAVTSASFDNFWCGHTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	0	1
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040331 [exp]	1.4	0.8201
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	3.5	0.8839
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10035443 [exp]	6.0	0.7421
AT5G58400			Peroxidase superfamily protein...		Lus10030146 [exp]	7.5	0.6749
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	10.6	0.7128
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	11.8	0.7128
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	13.0	0.7128
					Lus10033096 [exp]	14.0	0.7128
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	15.0	0.7059
AT3G44150			unknown protein		Lus10021005 [exp]	16.1	0.6972

Compare expression of checked genes

Lus10004610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.