Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18160 364 / 4e-123 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 343 / 9e-115 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 293 / 1e-95 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT1G02510 176 / 4e-52 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G55630 162 / 1e-45 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT5G46360 125 / 4e-33 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015265 [exp] 437 / 9e-146 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004525 [exp] 273 / 1e-86 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10001912 [exp] 155 / 2e-43 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004417 [exp] 129 / 2e-33 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 125 / 3e-33 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 97 / 2e-23 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004538 [exp] 0 / 1 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352500 [exp] 407 / 7e-140 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 392 / 7e-134 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 326 / 1e-108 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 314 / 4e-104 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G059200 [exp] 241 / 2e-75 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 231 / 8e-72 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.001G366800 [exp] 170 / 1e-48 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 166 / 3e-47 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 152 / 2e-42 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 147 / 2e-40 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF07885 [flax] [poplar] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Lus10004611 pacid=23149785 polypeptide=Lus10004611 locus=Lus10004611.g ID=Lus10004611.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAGCCACTCCTGACGTTTGTAACACGGAGCCCCAGATTCCGGCCGCTGCCACCGTGCCTCTGTCCTCTGCCGGATAGAGACGAACTCTCCT TACCAATCCCGATGACTCCCTCCGCTCTCAAGGACCGCCTCATCTTCGGCCCTTTCACTCCTTCTTCTCCCAACGTCGACGCCCTAAATCTCCTGCAATC CTCCCCGCGAACAACCTCCTCCTCCCCCGCAGCAACCTCCTCCTCCCCCGCAGCAACCTCCTTAGCAGTCCCAACCGCCGTCTTCGTCCCCCCGCCGAAA TCCAGATTCGCGAAGGCGCATCTCCACCGATGCCAAACAGCGCCGGCAATGTCGGCAATCAACGAGATCCACAATCAACATCCGCAAGATCCGACGCCTC AATTCGGCGAAAACTCGGTAATTCGTCAGACATTCATCTTCCTTATAGTCTACCTAGGGTTCGGCGTTCTAATTTACTGGATCTTCTGCGACGATTTCTC CGCCTCCCAAACGCATCCGATCGTCGACGCGTTCTACTTCTGTATCGTGACGATGTGCACGATCGGGTACGGGGACATCACGCCGAACAGCGCTGCGACG AAGCTCTTCGCCATCCTGTTCGTCATCGTTGGATTCGGATTCATCGACATCCTGCTCTCCGGAATGGTCAGCTACGTCCTCGATCTGCAGGAGAGTTACC TCCTGAAAAGAGGCGAGAATTACTTCGTGGATGTGAAGAAAGGGAGGATGAGGATTCGGATGAAGGTCGGATTGGCGTTAGGGGTGGTTGTTCTTTGCAT TGGGATTGGGGTTGCTGTGATGCATTTTATAGAGAGGCTTGGATGGGTTGATTCTTTGTATTTGTCTGTGATGTCTGTGACTACTGTGGGGTATGGAGAT AGGGCTTTTGGATCGATGAGCGGGAGGATTTTTGCGTCGATTTGGCTGCTGGTTTCGACGCTGGCTGTGGCGAGGGCGTTTCTGTACTTGGCGGAGGCTA GGGTTGATAAGAGGCAGAGGAGGATGGCGAAATGGGTTCTTGGTCATGATATGACTGTTTCTGAGTTCTTGGCTGCTGATATTGATCATAATGGTTATGT CAGCTCGCTCGCACCGTTCTTGTGTTTTCGATATGGGAATTGGTTAGTCCCCCCCCCACCTCCATCGATCATGTTGGATGCTAGTTGTTTTGATCTTGTT GGATGCTGCTGCGAAATCGACATAGCTTGCATTGTTCTTGCGAATCGACAATACCTGTTAAAGTCTGAACTACGAAATGCACTGTTCTCTTTAGCTGAAA TGTTGTTTTAG
AA sequence Show only first row Show all	>Lus10004611 pacid=23149785 polypeptide=Lus10004611 locus=Lus10004611.g ID=Lus10004611.BGIv1.0 annot-version=v1.0 MEKEPLLTFVTRSPRFRPLPPCLCPLPDRDELSLPIPMTPSALKDRLIFGPFTPSSPNVDALNLLQSSPRTTSSSPAATSSSPAATSLAVPTAVFVPPPK SRFAKAHLHRCQTAPAMSAINEIHNQHPQDPTPQFGENSVIRQTFIFLIVYLGFGVLIYWIFCDDFSASQTHPIVDAFYFCIVTMCTIGYGDITPNSAAT KLFAILFVIVGFGFIDILLSGMVSYVLDLQESYLLKRGENYFVDVKKGRMRIRMKVGLALGVVVLCIGIGVAVMHFIERLGWVDSLYLSVMSVTTVGYGD RAFGSMSGRIFASIWLLVSTLAVARAFLYLAEARVDKRQRRMAKWVLGHDMTVSEFLAADIDHNGYVSSLAPFLCFRYGNWLVPPPPPSIMLDASCFDLV GCCCEIDIACIVLANRQYLLKSELRNALFSLAEMLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004611 [exp]	0	1
AT4G18540			unknown protein		Lus10036093 [exp]	5.3	0.6379
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	8.2	0.6670
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	10.7	0.6810
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	18.2	0.6542
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	26.0	0.6603
					Lus10022721 [exp]	26.3	0.6629
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10018395 [exp]	28.4	0.6224
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10028009 [exp]	29.2	0.5582
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10035013 [exp]	34.4	0.6528
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10018441 [exp]	39.1	0.5653

Compare expression of checked genes

Lus10004611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.