Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29860 156 / 7e-46 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 150 / 6e-43 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G46350 143 / 2e-40 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G49520 138 / 1e-37 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT2G47260 135 / 3e-37 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT1G69310 127 / 2e-34 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT3G62340 117 / 4e-31 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G44745 107 / 8e-28 WRKY WRKY12 WRKY family transcription factor (.1) AT1G13960 112 / 9e-28 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G03340 111 / 2e-27 WRKY WRKY3 WRKY DNA-binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004537 [exp] 318 / 6e-109 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 141 / 5e-39 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 140 / 7e-39 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036891 [exp] 130 / 5e-35 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 129 / 1e-34 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10003128 [exp] 110 / 2e-29 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 110 / 2e-29 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10012547 [exp] 107 / 7e-29 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10000173 [exp] 112 / 2e-28 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352400 [exp] 180 / 9e-55 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 178 / 5e-54 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 160 / 5e-47 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 156 / 2e-45 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.008G103300 [exp] 140 / 1e-38 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 139 / 1e-38 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 138 / 2e-38 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.010G147700 [exp] 138 / 8e-38 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G160100 [exp] 131 / 5e-36 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.008G094000 [exp] 130 / 8e-36 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10004612 pacid=23149765 polypeptide=Lus10004612 locus=Lus10004612.g ID=Lus10004612.BGIv1.0 annot-version=v1.0 ATGTCTGACCACCACCAGCTCTACTACCACCACGACTCCTCCCCCTCCGCAGCCTTCTTCCCCTACGGTCAGCCAACCATGGTCGTCGACGACGACCCAC CATACTACAACAATCTGAGCTTCACCGACTGCCTTCATGGCTCCGTCGACTACAGCTCCCTCTCCAAAGCCTTCGACCTATCTCCCCCTCCCGCTGCCGA CCACCACGTCGGCAACAACAACAACGGCCCGCTCACGCCCAACTCCTCCGGGTCGTTCTCGTCCGAGGAAGACTCCGGAAGCATTTGTAATGGGAAGAAA AGCTCCGAAACCGCGGCGACAGCCACAGGAGAAGAGAACAAGGCGGCGGCGGGGGAGAAGAAGGCGGGGAAAGGGGAGAAGAGGAAGAAGGAGGCGAGAT TCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTATCGATGGAGGAAATACGGCCAGAAAGCTGTCAAGAATAGTCCTTATCCACGGAG CTACTACAGGTGTACGACGCAGAAATGCGGGGTGAAGAAGAGGGTAGAGAGGGCAATCGAGGATCCGTCAACGGAAATAACAACTTACGAAGGCCAACAC AACCACCCACTCCCTTCCACGCTCCGAGGAAACGCGGCCGCTGCCGCAGCCATGTTCTCTCACTCCATCCTAAGTACCCCTAATTCCGCCACCTTCCCGG CCGAGTTCCTCCTCCACATGTCCGGCCAAAACCACCAATCCTCCGCCGCTGCCGCCACTTCTTCCGCCGCCCTGGGGTCCATGTACCACCATCAACAACA ACAGAATTTCGGCCAGCAGCAGCAGCAACAACAACAGCAGCAGTACTACGGTCAGCATTTGTCTGACTATGGACTTTTGCAAGATGTCGTGCCTAATTCC ATGTTCTTCAAACAGGAGGAGTCATCTTGA
AA sequence Show only first row Show all	>Lus10004612 pacid=23149765 polypeptide=Lus10004612 locus=Lus10004612.g ID=Lus10004612.BGIv1.0 annot-version=v1.0 MSDHHQLYYHHDSSPSAAFFPYGQPTMVVDDDPPYYNNLSFTDCLHGSVDYSSLSKAFDLSPPPAADHHVGNNNNGPLTPNSSGSFSSEEDSGSICNGKK SSETAATATGEENKAAAGEKKAGKGEKRKKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCGVKKRVERAIEDPSTEITTYEGQH NHPLPSTLRGNAAAAAAMFSHSILSTPNSATFPAEFLLHMSGQNHQSSAAAATSSAALGSMYHHQQQQNFGQQQQQQQQQQYYGQHLSDYGLLQDVVPNS MFFKQEESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	3.5	0.9791
AT5G36160			Tyrosine transaminase family p...		Lus10033659 [exp]	3.9	0.9756
					Lus10027376 [exp]	3.9	0.9818
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	4.0	0.9865
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	7.7	0.9794
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	9.0	0.9766
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	9.6	0.9831
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	11.2	0.9768
					Lus10002555 [exp]	12.3	0.9728
AT1G63810			unknown protein		Lus10014305 [exp]	12.3	0.9686

Compare expression of checked genes

Lus10004612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.