Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18905 343 / 1e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G18900 318 / 3e-105 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 307 / 3e-101 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 53 / 2e-07 TAF5 TBP-associated factor 5 (.1) AT1G29260 52 / 3e-07 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G33260 52 / 4e-07 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT4G33270 52 / 5e-07 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT3G63460 51 / 9e-07 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT5G58230 50 / 2e-06 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 50 / 2e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015348 [exp] 452 / 3e-157 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001126 [exp] 456 / 4e-155 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004536 [exp] 290 / 9e-98 AT4G18905 194 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026337 [exp] 57 / 2e-08 AT4G34460 570 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10042325 [exp] 55 / 6e-08 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10005074 [exp] 53 / 2e-07 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10037378 [exp] 53 / 3e-07 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1) Lus10042765 [exp] 52 / 6e-07 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10007449 [exp] 52 / 7e-07 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019833 [exp] 437 / 2e-151 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 436 / 4e-151 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G179700 [exp] 53 / 2e-07 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 52 / 4e-07 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G216200 [exp] 51 / 7e-07 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G048900 [exp] 50 / 1e-06 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 50 / 2e-06 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G178700 [exp] 50 / 2e-06 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G021800 [exp] 50 / 2e-06 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 50 / 3e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10004613 pacid=23149764 polypeptide=Lus10004613 locus=Lus10004613.g ID=Lus10004613.BGIv1.0 annot-version=v1.0 ATGATACCGGAACTTACATGGTTGCCGAAAGGTGCGGTGAACTCCGTCCCTGGCGTGGCAGAACCACCTCCCAATGAAGATAACGAAGAGCTGGTGGATT CCGGGGCTTCAGAAAGTGGAGAAAGTGGGAGTGAATCGGAGGATGATGACGGAATTATGGATGTGGAAGCCGAGAATCAATCTGACGGAGTCAGTCGTGC TGTAGCTGATGATGATGCTGATGATGATGATGACTTGACGGCGCTTCACTTGGAAGATTATGATGACGACGACGATGAAGAAGTGGAGATTTTCAGCTCT GGAAGTGGAGACGTTTATTATCCCAATGATGATGACTTTGAAGAGGAAGAGGATATGACTATTAGGCCACCAGATGGATTAATAGTTTGTGCACGTACTG AAGATGAACTCAGTCATCTCGAGGTTTGGATATATGAAGATTGTGATGATGGTGAACCAAATAAGTACATTCACCATGATATTATCCTTTCCGCGTTTCC CCTGTGCTTAGCTTGGCTTGATTGCCCAATTAGAGGAGGGGAAAAAGGGAACTTCATTCCTGTTGGTTTAATGGAATCTGTTATTGAAATATGGGATCTT GACAGGATTCAGGAAGTACAACCATCTGCAGTGTTAGGTGGCGTTGCTGTTTCTGAGGTTCAAGCAGTTGCATGGAATCACCATGATCCACAAATTCTTC TTAGTGGGTCTTTCGATCGATCGGTTGTAATGAAAGATGCTAGGAACCCTATGCAGCCAGGAATCAGATGGTCTGTTACAGCTGATGTCGAAAGCTTGGC ATGGGATCCACACAATAGACACAACTTTGTGGTGAGTCTTGAAGATGGTACCGTCCAAGGTTTTGATGTCCGTACAGCAACATCTGCTGCAAGTTCTGAT TTGAAACCGAGTTTCACAATCCATGCACATGATAGAGCTGTGTGCACAGTCGCCTATAACCCTCGTGTTCCTAATCTTCTTGCAACTGGATCAACAGATA AGATGGTAAAAGTTTGGGATTTATCAAACAACCAACCTTCATGTGTTGCATCAAACAACCCGAAAGCGGGAGGTGTATTCTCGATTTGCTTCTTGCAGCA TAGCCCGTTTCTGATGGCGATCGGAGGTTCGAAGGGAAGTTTAGAAGTATGGGACACATTATCAGATGCTGGTGTTTTGAGAAGATTTGGGGACTATAAC CATTAA
AA sequence Show only first row Show all	>Lus10004613 pacid=23149764 polypeptide=Lus10004613 locus=Lus10004613.g ID=Lus10004613.BGIv1.0 annot-version=v1.0 MIPELTWLPKGAVNSVPGVAEPPPNEDNEELVDSGASESGESGSESEDDDGIMDVEAENQSDGVSRAVADDDADDDDDLTALHLEDYDDDDDEEVEIFSS GSGDVYYPNDDDFEEEEDMTIRPPDGLIVCARTEDELSHLEVWIYEDCDDGEPNKYIHHDIILSAFPLCLAWLDCPIRGGEKGNFIPVGLMESVIEIWDL DRIQEVQPSAVLGGVAVSEVQAVAWNHHDPQILLSGSFDRSVVMKDARNPMQPGIRWSVTADVESLAWDPHNRHNFVVSLEDGTVQGFDVRTATSAASSD LKPSFTIHAHDRAVCTVAYNPRVPNLLATGSTDKMVKVWDLSNNQPSCVASNNPKAGGVFSICFLQHSPFLMAIGGSKGSLEVWDTLSDAGVLRRFGDYN H

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	0	1
AT5G42470			unknown protein		Lus10033139 [exp]	2.8	0.7670
AT1G72090			Methylthiotransferase (.1)		Lus10008262 [exp]	8.7	0.7489
					Lus10024547 [exp]	12.5	0.7177
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	14.1	0.7666
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	17.5	0.7394
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	18.7	0.7241
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	18.9	0.7659
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	21.6	0.7124
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	24.5	0.7371
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	27.2	0.7347

Compare expression of checked genes

Lus10004613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.