Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44020 691 / 0 Mitochondrial transcription termination factor family protein (.1) AT4G02990 422 / 4e-143 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G21710 145 / 3e-37 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT1G78930 128 / 2e-31 Mitochondrial transcription termination factor family protein (.1) AT4G38160 119 / 1e-29 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G14605 114 / 4e-27 Mitochondrial transcription termination factor family protein (.1) AT5G55580 91 / 2e-19 Mitochondrial transcription termination factor family protein (.1) AT5G54180 81 / 5e-16 PTAC15 plastid transcriptionally active 15 (.1) AT2G03050 72 / 8e-14 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 69 / 1e-12 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004534 [exp] 611 / 0 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 439 / 3e-150 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 353 / 3e-117 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004535 [exp] 277 / 8e-92 AT2G44020 206 / 6e-65 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 142 / 3e-36 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 117 / 4e-29 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10035714 [exp] 117 / 8e-28 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 105 / 5e-24 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 105 / 6e-24 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116700 [exp] 716 / 0 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 451 / 1e-154 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 138 / 1e-34 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 120 / 5e-30 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.017G067600 [exp] 118 / 2e-28 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 115 / 1e-27 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 111 / 6e-26 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 93 / 6e-20 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 86 / 1e-17 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.001G034600 [exp] 77 / 4e-15 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10004614 pacid=23149788 polypeptide=Lus10004614 locus=Lus10004614.g ID=Lus10004614.BGIv1.0 annot-version=v1.0 ATGAGTTTATCATTGCTCAGGAGAAGGAATTTGTTCTCTGTATTCTGCACCCTTAGACCTCTCTCCCCGTTGCAATTTTGCCAAAACCCTAACCCTTTGC TACACCGATTAAAGGTTTTGAATCATCTTGCCTCATTCTCCAGCCAGTCCTCCTCCAAATTCCCAGAATACGAGATGCCTTCAGTCACTTGGGGTGTTAT ACAGGGAAAGAAAGAGAAGTTAGTGAATCGTGTCATAATATGTGATTATCTCAAGACTTTAGGTATCATTCCTGATGAACTGGAGACTCTCGAGCTCCCG TCCACCGTTCAGGTTATGAAAGAACGGGTTGAGTTCTTGCAGAGGTTGGGATTGACTATCGATGATTTCAACGAGTATCCTTTGATCCTAGGTTGCAGTG TTAGGAAGAACATGATCCCTGTATTAGGCTACTTGGAGAAAATCGGCATAAGTAGGTCGAAACTCGGGGAGTTTGTCAAGAGCTATCCTCAAGTTATGCA CATGAGTGTGGTGGTTGAGCTTATGCCTGTTGTCAAGTTCCTTCGCGGACTTGATGTCGAGAAGCAAGATATCGGATATGTACTCCTAAAGTATCGTGAG CTTCTTGGCTTTAAACTCGAAGGAACGATGAGTACCTCTGTCGCTTATCTTGTTAGTATTGGTGTTAGTCCGAGAGATATTGGACCGATGGTGACTCAGT ATCCGTTCCTTCTGGGGATGCGAGTAGGGACTGTGATCAAGCCGTTTGTTGATTACATGGTCTCTTTAGGTTTGCCGAAAAAGATCATAGCTAGAATGCT GGAGAAGCGGCCGTATATCCTTGGATACAATCTTGAAGAAACTTTGAAGCCAAATATAGAGTGTTTGGTCAGTTTCGGTGTTAGGAAAGAATCGCTAGGT TTTGCTATAGCGCAATACCCGCAGATTCTCGGGTTGCCTTTGAAAGCGAAGCTTTCTTCTCAACAATACTTCTTCGGTTTGAAGCTCAAGATAGACCCGG ACGGTTTTGCACAGGTGATAGAGAAGATGCCTCAGATTGTAAGCCTTAGTCAACAAGTAATTGTGAAACCTTTTCAGTTCCTTCTCGAGAGGGGTATCCC AGCTCACGATGTAGCAAAGATGGTCGTCAAGTGTCCTCAGTTGCTTGCGTCGAGAGTCACACTGATGAAGAACAGCTTCTATTTCTTCAAGAGCGAAATG GGCAGGCCGGTGAAAGAGCTTGTTGATTTCCCTGAGTTTTTCACTTACAGCTTGGAGTCGAGAATTAAACCCAGATATCAGGTGATGAAAAGCAAAGGTG TAAGGTGTTCGCTAGATTCCCTCCTGAATTGCAGTGACCAGCGATATGAGGAAATGCTGCAAATCGGTGGTAGTCTTGAATCTGAGATGATGGCTGGTCC ATGTTTCAGTATGGGAGGGAAGTTACAGTTACCGCGGGACGAGATTGTTTCGGAATCGGACGAGGAAGACGATGATGAGAGTGATCACGAGATACTCTAT AGGCGCACTGTATCTATCTGA
AA sequence Show only first row Show all	>Lus10004614 pacid=23149788 polypeptide=Lus10004614 locus=Lus10004614.g ID=Lus10004614.BGIv1.0 annot-version=v1.0 MSLSLLRRRNLFSVFCTLRPLSPLQFCQNPNPLLHRLKVLNHLASFSSQSSSKFPEYEMPSVTWGVIQGKKEKLVNRVIICDYLKTLGIIPDELETLELP STVQVMKERVEFLQRLGLTIDDFNEYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFVKSYPQVMHMSVVVELMPVVKFLRGLDVEKQDIGYVLLKYRE LLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPFLLGMRVGTVIKPFVDYMVSLGLPKKIIARMLEKRPYILGYNLEETLKPNIECLVSFGVRKESLG FAIAQYPQILGLPLKAKLSSQQYFFGLKLKIDPDGFAQVIEKMPQIVSLSQQVIVKPFQFLLERGIPAHDVAKMVVKCPQLLASRVTLMKNSFYFFKSEM GRPVKELVDFPEFFTYSLESRIKPRYQVMKSKGVRCSLDSLLNCSDQRYEEMLQIGGSLESEMMAGPCFSMGGKLQLPRDEIVSESDEEDDDESDHEILY RRTVSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	0	1
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10008480 [exp]	1.0	0.8766
AT5G20600			unknown protein		Lus10011961 [exp]	8.9	0.8651
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	13.8	0.8209
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	16.3	0.8497
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	16.7	0.8524
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	18.2	0.8127
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10008130 [exp]	19.3	0.8323
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10013167 [exp]	21.2	0.8211
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10013378 [exp]	23.9	0.8304
AT3G04560			unknown protein		Lus10042552 [exp]	24.0	0.7812

Compare expression of checked genes

Lus10004614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.