Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06000 521 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G65560 226 / 2e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 220 / 4e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 218 / 1e-63 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 212 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 211 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 213 / 4e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 211 / 9e-61 RPF2 rna processing factor 2 (.1) AT1G12700 212 / 3e-60 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63330 208 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004533 [exp] 1012 / 0 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10003347 [exp] 365 / 2e-124 AT2G06000 248 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10027916 [exp] 216 / 1e-61 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 214 / 2e-61 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 215 / 3e-60 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 211 / 4e-60 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 211 / 1e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 209 / 2e-59 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 206 / 4e-59 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141800 [exp] 667 / 0 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.005G038400 [exp] 238 / 1e-70 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 233 / 7e-69 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 229 / 1e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 227 / 1e-66 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 227 / 1e-66 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 224 / 6e-66 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 224 / 8e-66 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 223 / 8e-65 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 221 / 1e-64 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004615 pacid=23149757 polypeptide=Lus10004615 locus=Lus10004615.g ID=Lus10004615.BGIv1.0 annot-version=v1.0 ATGACTCTCTTATCATCATTCACTGCGCGGCCTTTCAAGGTTCGTGCCTTCTCCGCAATCGCCGCCCTTCGGATTCACACTCAAGGCGGCGGATCTCCGG AGAATTCCGAAGCTTGGTTTGTTAAAGTTGCGTCGACACTCTTTGCCGTCAATTCGGAGTCGTGTCTGCCGTATCTCCGTGCAAACCTGACTACTCCGTT GACTGCCTTCGAGGTGATTCAGAGGTTTGAGGACCGCCCCGAATTAGGTTTCGAGTTCTTGGAGTTCAGTAGATCGAATTTGAACCTCACTCATTCTTTC GCTACTTATAACTCGATGATAAGATCCTTTTGTCAAATGGGGCTGCATGATTTGGCACAAGTTTTGTTTGGTTACATGAGAAGCGATGGGCATTTGGCTG AAAGTAGTGAGCTTTTGTGGTTCATGGTTACTGCATTCGTGCATGCTCGGAGATTTGATTTTGCTGGCAAATTGTTGTCTGAGTTGCGGGGTTTGGGTGT TCAGATAACTCCATTTGTGTATAATAATCTTCTGAATGAGCTCGTTAAGTCGAATCAAGTGCACGAAGCTGTTATTTTGTTCAAAGATTTTCTGGTGCTG GAGTCTTCTCCTGATACTTGGACTTTCAACATTCTTATCGGAGGTCTTTGCAGAGTAGGGGAGGTCGATAGAGCGTTTGAGTTCTTGAATGATATGGAGA GTTTTGGTTGTTCACCTGATATTGTTACTTACAATACTCTCATTAACGGACTCTGTAGGATAAATGACTTCGACAGAGGCCTAGGCTTGTTGCAGGAACT TCAATCCGGGAGTGGTTGTTGTCCAGATGTTGTGAGTTATACATCAATCATGTCCGGTTTCTGTAAATCCGGTCAGTTGGAAGATGCATATAGTCTCTTT CAGGAGATGGTTGGGAGTGGGATCAAACCCAGCATCATCACTTTTAACGTGCTGATCGACGGCTATGGAAAGATCAATGACATGGTTGCAGCAGAAGCAG TTTATGAAAAGATGGGCCGGTTCAGTTGCTCTCCTGATGTGGTTACTTTCACTTCCTTAATCGATGGTTACTGTCGATGTGGACAGGTGAGCCTCGGTAT GAAGCTCTGGGATGTGATGAGAGTAAGAAACATGATTCCTAATGCGTATACATACGCCGTTCTTATTAACGCTCTTTGCAAGGAGAATAGACTTCACGAG GCCCGCAGACTTTTGACAGAACTGAAGTTTAGTAACGTTGTAGCAAAGGCATTCATGTACAATCCCGTAATTGACGGGTTCTGCAAAGCTGGCAATGTCG ATGAGGCAAATGTCATCGCAAAAGAGATGGAAGAGAAGAAGTGTGTTCCCGACAAAGTGACGTTTACCATACTTATTATCGGCCACTGTATGAAAGGTAG AGTGTCTGACGCAATCGGTCTTCTCAATAAGATGCTGACCATCGGTTGCTCTCCTGATAACATTACCATTAGTTCATTGACATCCCGCCTTTTGAAAGCT GGGTTACCTACCGAAGCATTCCGAGTAAAGCAAATGCTATTGGAAGACTTGAACTCGGGACGGTCAAGTTATGGAAAAATTGCCCCCGTTGTTGTGAGAG CTAGAGATATCCCTGTGGCAGCTTGA
AA sequence Show only first row Show all	>Lus10004615 pacid=23149757 polypeptide=Lus10004615 locus=Lus10004615.g ID=Lus10004615.BGIv1.0 annot-version=v1.0 MTLLSSFTARPFKVRAFSAIAALRIHTQGGGSPENSEAWFVKVASTLFAVNSESCLPYLRANLTTPLTAFEVIQRFEDRPELGFEFLEFSRSNLNLTHSF ATYNSMIRSFCQMGLHDLAQVLFGYMRSDGHLAESSELLWFMVTAFVHARRFDFAGKLLSELRGLGVQITPFVYNNLLNELVKSNQVHEAVILFKDFLVL ESSPDTWTFNILIGGLCRVGEVDRAFEFLNDMESFGCSPDIVTYNTLINGLCRINDFDRGLGLLQELQSGSGCCPDVVSYTSIMSGFCKSGQLEDAYSLF QEMVGSGIKPSIITFNVLIDGYGKINDMVAAEAVYEKMGRFSCSPDVVTFTSLIDGYCRCGQVSLGMKLWDVMRVRNMIPNAYTYAVLINALCKENRLHE ARRLLTELKFSNVVAKAFMYNPVIDGFCKAGNVDEANVIAKEMEEKKCVPDKVTFTILIIGHCMKGRVSDAIGLLNKMLTIGCSPDNITISSLTSRLLKA GLPTEAFRVKQMLLEDLNSGRSSYGKIAPVVVRARDIPVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	0	1
AT1G29320			Transducin/WD40 repeat-like su...		Lus10020991 [exp]	4.2	0.8645
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	6.6	0.8583
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	7.7	0.8918
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	11.0	0.8663
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	11.7	0.8166
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	13.4	0.8215
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	14.5	0.7635
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	15.0	0.8420
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	17.1	0.8350
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	21.1	0.8038

Compare expression of checked genes

Lus10004615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.