Plant FIBer expression Database

Lus10004616 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28200 744 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003351
[exp]
1205 / 0 AT4G28200 765 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G040000
[exp]
833 / 0 AT4G28200 801 / 0.0 unknown protein
Potri.013G135300
[exp]
47 / 5e-05 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08640 U3_assoc_6 U3 small nucleolar RNA-associated protein 6
Representative CDS sequence
>Lus10004616 pacid=23149768 polypeptide=Lus10004616 locus=Lus10004616.g ID=Lus10004616.BGIv1.0 annot-version=v1.0
ATGGCGGACACGGTGCAGTACCGCCTGGAGCGCATGGTCGAGGAGCTGGATGACCTAGAGCGTCGAGGACTGTTCACCCGCAGGGAGATAGCTGAGATTG
TGAAGCAGAGGCGGAAGTTCGAATACAGATTGAAGCGGCCGAGTCCTCTGAAGCAGGACTATCTCACCTACATAGATTACGAAACTCAACTCGACAGGCT
TCGCCGCCTCCGAAAGAAGTCGGTATCCTGCGACCTCGACAAGAAGAACAACAAGAAGACGAAACTCTCAGTTTCCGACTACACCGGAGTTGCCAGGATC
ATGGAGATTTACAGACTCGCCGTGATGAGGTACAAAGGAGATGTTGATCTCTGGATTCGCTATTTGGAGTTCTGCAAGGAGCGGAAGAACGGGAGAATGA
AGAAGGTCCTCGCTCAACTACTTAGGTTTCATCCGAAGGTCCCTGGAGTGTGGATTTATGCTGCAGCTTGGGAATTCGACCATAATCTAAATGCTGAAGC
AGCTCGTGCTCTTATGCAAAGCGGTTTGAGGGTATGCCCAACTTCAGAGGATCTCTGGGTGGAGTATCTCCGGATGGAGCTGACTTACCTCAACAAGTTG
AAAGCACGAAGAGTTGCTCTTGGAGAGGGCAAGGGAACTCTGGTTCGTGAAGACGGTGATGCTGTTGAAAAACAGTGGAGAGATGAAAACAAAGATTTAT
TTATGTCACTTGACGAAGAAGCAAAGCACGGCAATGAATCAAACACTGATGATGATGAAGAGTCGGAGGGTAAAACAGATTTGTTTAAGGAGCAAGGTCT
TTACATTCTCCGGGCAGTTTATAGTGGCGCAGTGGAGGCCTTGCCATCAAGCTTCAGCCTTAGACAACGGTTACTTGAGATATTGGAAGCAACAGACTTG
GCACATTCAGAAGACATGCGTCAACAGATCCTAAGTGATATGAAAAGAGACTTTTCCAGAGATCCCAAGTACTGGGAATGGCTTGCTAGACTTGAGGTGA
GCAATCCCAGAAGTAACCAGGGTATAGCTGGCGATGCCATGTTTGAGCAACTACAAAAGGCAGCAAAGGTCTATGAAGAGGCATTAGAAGTTCTTCCTTC
TCCAGTTATGTTTAACATGTACACAAGATTCTTGATGGATATCGTTGCCCCCAAAGATGAAAGCACCCAGTTGTCTGTTTGTGCGCAAGATTGGGTTTCA
CGCCTTCTGTCAGCGTATGAGAAGGCCGAGCTGGTGGGTTCAATGTCAGAGGATCTTGCTTGTGATTACGTTTCATTTTATTTGCACCTGGGAAATTTTG
AGAAAGCCCGGCAGCTAGCAGGAGAGCTTTGCCGTGGAGAGCTTTCAAAGTCAGCTAAGTTATGGTTCTTAAGGGCCTCTATGGAAACTAGATGTATCAC
TAAGCATATTCTTTCTCAAACGAAGGCCAGTTTGGATTCCGCTTTTGAACTCGTTAAAGAAGCGCTGAGTAAAGTCCCAGTATCAGAATCGGAGGAACTG
TGGCTCATGGCATTGAAGTTGTTTGCTGTTGAAAAGGATTATTTTCAACAGCTGGTTGAGATGTCTATTACTGCAGTAGCTAAAAGTGGGGGGAGTGATT
GTGGATTCTCCCTCTCTTCTGCTGTAGTAAATTTCATTCTCCATAAGGATGGCGTAAAGGATGCTAGAAGGCTATATGAGAGATTTCTTGCCCTTCCACG
TCCAGGTCTTTCTTTGTATACAAAGTGCATAGAATTGGAACAGAACCTTGCCTCTATCGGTGACAAGGAAAGTCTCGTAATTGCTCGAAAGTTGTATGAA
TCTGCACTTTCAAGCTACGATCAGAATTTGAGCTTGTGGCAAGATTACTATTCGATGGAGATTAAGTTGGGAACGTCGGAGACGGCGGATGCTGTACATT
GGCGAGCAAGGAAGACTCTGAAGAACCAAGCTGCTGCTGCTGCAACTTTGGTAGCTTCTCCCTTGTAA
AA sequence
>Lus10004616 pacid=23149768 polypeptide=Lus10004616 locus=Lus10004616.g ID=Lus10004616.BGIv1.0 annot-version=v1.0
MADTVQYRLERMVEELDDLERRGLFTRREIAEIVKQRRKFEYRLKRPSPLKQDYLTYIDYETQLDRLRRLRKKSVSCDLDKKNNKKTKLSVSDYTGVARI
MEIYRLAVMRYKGDVDLWIRYLEFCKERKNGRMKKVLAQLLRFHPKVPGVWIYAAAWEFDHNLNAEAARALMQSGLRVCPTSEDLWVEYLRMELTYLNKL
KARRVALGEGKGTLVREDGDAVEKQWRDENKDLFMSLDEEAKHGNESNTDDDEESEGKTDLFKEQGLYILRAVYSGAVEALPSSFSLRQRLLEILEATDL
AHSEDMRQQILSDMKRDFSRDPKYWEWLARLEVSNPRSNQGIAGDAMFEQLQKAAKVYEEALEVLPSPVMFNMYTRFLMDIVAPKDESTQLSVCAQDWVS
RLLSAYEKAELVGSMSEDLACDYVSFYLHLGNFEKARQLAGELCRGELSKSAKLWFLRASMETRCITKHILSQTKASLDSAFELVKEALSKVPVSESEEL
WLMALKLFAVEKDYFQQLVEMSITAVAKSGGSDCGFSLSSAVVNFILHKDGVKDARRLYERFLALPRPGLSLYTKCIELEQNLASIGDKESLVIARKLYE
SALSSYDQNLSLWQDYYSMEIKLGTSETADAVHWRARKTLKNQAAAAATLVASPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28200 unknown protein Lus10004616
[exp]
0 1
AT2G41620 Nucleoporin interacting compon... Lus10039624
[exp]
1.7 0.9468
AT4G32910 unknown protein Lus10038723
[exp]
4.5 0.9279
AT4G28200 unknown protein Lus10003351
[exp]
4.9 0.9317
AT2G34357 ARM repeat superfamily protein... Lus10021944
[exp]
4.9 0.9373
AT1G52980 AtNug2 nuclear/nucleolar GTPase 2, GT... Lus10021017
[exp]
6.5 0.9169
AT4G07410 PCN POPCORN, Transducin family pro... Lus10005385
[exp]
8.1 0.9279
AT3G55160 unknown protein Lus10007252
[exp]
8.2 0.9294
AT1G33390 ATFAS4 FASCIATED STEM 4, RNA helicase... Lus10025616
[exp]
9.0 0.9117
AT5G59980 Polymerase/histidinol phosphat... Lus10028138
[exp]
14.0 0.9028
AT2G41620 Nucleoporin interacting compon... Lus10029548
[exp]
17.0 0.9079

Lus10004616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.