Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42490 1205 / 0 Copper amine oxidase family protein (.1) AT1G31690 241 / 9e-70 Copper amine oxidase family protein (.1) AT1G31710 229 / 2e-65 Copper amine oxidase family protein (.1) AT3G43670 218 / 3e-61 Copper amine oxidase family protein (.1) AT1G31670 218 / 1e-60 Copper amine oxidase family protein (.1) AT1G62810 215 / 4e-60 Copper amine oxidase family protein (.1) AT4G12290 214 / 2e-59 Copper amine oxidase family protein (.1) AT4G14940 207 / 1e-57 ATAO1 amine oxidase 1 (.1) AT4G12280 115 / 3e-28 copper amine oxidase family protein (.1) AT4G12270 118 / 6e-28 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026696 [exp] 1469 / 0 AT2G42490 1208 / 0.0 Copper amine oxidase family protein (.1) Lus10019485 [exp] 1174 / 0 AT2G42490 1154 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 259 / 2e-76 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 259 / 3e-76 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 254 / 3e-74 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 228 / 6e-65 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 219 / 1e-61 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 219 / 3e-61 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 219 / 5e-61 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045600 [exp] 1268 / 0 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 1226 / 0 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 1219 / 0 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 252 / 6e-74 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 250 / 5e-73 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 245 / 3e-71 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 240 / 2e-69 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 233 / 4e-66 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 216 / 2e-60 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10004618 pacid=23176404 polypeptide=Lus10004618 locus=Lus10004618.g ID=Lus10004618.BGIv1.0 annot-version=v1.0 ATGGCCACAGCTCAGGAAAAGGCGGCGCTAGCTTCTTCAGCTTCTATCCCTTCTGAGAAGCCTCCTTCATCCATGGCTGCTGCTACCTTGATTGTTGATT CCATCTCCGATAATCAAACCACCAAAGTCACTGCTGCAACCCCTGTGATGTCAAGGGCACAGACTTGCCACCCTTTGGATCCGTTGATGGCTGCTGAGAT ATCTGTTGCTGTTGCTACTGTTAGAGCTGCTGGAAAAACCCCTGAGGTGAGAGATAGTATGAGGTTTATTGAAGTGTCCTTAGTGGAGCCAGAGAAGAAT GTGATTGCATTAGCAGATGCATACTTCTTCCCACCATTCCAGCCTTCACTGCTCCCCAAGACAAAAGGCAGGGCCGTGATTCCAACCAAGCTTCCTCCTC GAAAGGCCAGGCTCGTCGTTTACAACAAGAAGTCGAACGAGACGAGTGTCTGGACTGTTGAGCTTACCGAGGTTCATGCTGCAACGAGAGGTGGGCACCA CAGAGGCAAAGTGATCTCGTCCAAAGTGATTCCAGATGTTCAGCCTCCAATGGATGCTGAGGAGTATGCTGAATGTGAAGCTGTGGTGAAAGACTTCCCA CCTTTCATGGAGGCTATGAGGAAGAGGGGTATTGAGGATATGGATCTTGTCATGGTGGATCCATGGTGTGTTGGATACCATAGTGATGCTGATTCACCAA GCCGAAGGCTCGCGAAGCCGCTAATCTTCTGCAGAACCGAGAGTGACTGCCCAGTGGAGAATGGCTATGCTCGTCCCGTTGAAGGCATCCATGTCGTTGT TGATATGCAGAACATGGTGGTGATCGAGTTCGAAGACCGTAAACTTGTTCCCTTACCACCAGCTGATCCGTTGAGAAACTACACTGCTGGTGAAACTCGA GGTGGTGTTGACAGGAGCGATGTGAAACCTCTGCAGATTATCCAGCCTGAAGGCCCCAGCTTCCGAGTCAACGGCCACTTTGTTAACTGGCAGAAGTGGA ATTTTCGGATTGGCTTTACTCCACGAGAGGGATTGGTTATATATTCGGTTGCATATCTTGATGGAAGTCGAGGCAGGAGACCGGTTGCTCACAGACTAAG TTTCGTCGAAATGGTCGTACCTTATGGCGATCCGAACGATCCACATTACAGGAAGAATGCTTTTGATGCTGGGGAAGATGGGTTGGGGAAGAATGCACAT TCTCTCAAGAAAGGCTGTGATTGCTTGGGGTATATCAAGTACTTCGACGCACATTTCACGAACTTCACTGGAGGTGTTGAAACGATCGAGAACTGTGTTT GTCTGCACGAAGAGGATCATGGAATCTTATGGAAACATCAAGATTGGAGAACTGGTCTAGCTGAAGATGGGAAGATTGAAGCAGAGGTAAAGCTGACTGG CATTCTGAGCTTGGGAGCATTACAGCCTGGAGAAGTTCGAAAGTATGGAACTACAATTGCTCCTGGACTGTACGCACCGGTTCATCAGCATTTCTTCGTG GCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGTGAAGCATTTAATCAGGTTGTTGAAATGAACGTCAAAGTTGAAGAGCCAGGAAAGAACAATGTCC ATAACAATGCATTCTACCCTGAAGAGGAACTTCTCAGGACCGAATTGCAAGCAATGCGCGACTGCAATCCACTCTCCGCTCGCCATTGGATCATCAGAAA CACGAGAACTGTCAACCGAACCGGGCAGCTCACCGGATACAAACTAGTACCCGGATCAAACTGCTTGCCATTAGCAGGCTCCGAAGCAAAGTTCCTCAGA AGAGCCGCCTTCTTGAAGCACAACCTGTGGGTTACACCTTACACTCGCGACGAAATGTACCCAGGAGGAGAGTTCCCTAACCAGAACCCTCGAGTCGGGG AAGGGTTAGCCACTTGGGTCAAGCAGAATCGACCCATCGAAGAGACCGACATTGTCCTCTGGTATGTATTTGGAGTTACACATATCCCTAGACTTGAAGA TTGGCCAGTCATGCCAGTGGAACACATTGGTTTCATGCTCATGCCACATGGGTTCTTTAACTGCTCGCCAGCAGTGGATGTGCCTCCAAGTGTGAATGAT TGTGAGCAGCTCAAAGACAGCACTGTCATCCCTCCAAAGCCTATCGTCCCAAATCCACTCATTGCCAAGCTCTGA
AA sequence Show only first row Show all	>Lus10004618 pacid=23176404 polypeptide=Lus10004618 locus=Lus10004618.g ID=Lus10004618.BGIv1.0 annot-version=v1.0 MATAQEKAALASSASIPSEKPPSSMAAATLIVDSISDNQTTKVTAATPVMSRAQTCHPLDPLMAAEISVAVATVRAAGKTPEVRDSMRFIEVSLVEPEKN VIALADAYFFPPFQPSLLPKTKGRAVIPTKLPPRKARLVVYNKKSNETSVWTVELTEVHAATRGGHHRGKVISSKVIPDVQPPMDAEEYAECEAVVKDFP PFMEAMRKRGIEDMDLVMVDPWCVGYHSDADSPSRRLAKPLIFCRTESDCPVENGYARPVEGIHVVVDMQNMVVIEFEDRKLVPLPPADPLRNYTAGETR GGVDRSDVKPLQIIQPEGPSFRVNGHFVNWQKWNFRIGFTPREGLVIYSVAYLDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAH SLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEDGKIEAEVKLTGILSLGALQPGEVRKYGTTIAPGLYAPVHQHFFV ARMDMAVDCKPGEAFNQVVEMNVKVEEPGKNNVHNNAFYPEEELLRTELQAMRDCNPLSARHWIIRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLR RAAFLKHNLWVTPYTRDEMYPGGEFPNQNPRVGEGLATWVKQNRPIEETDIVLWYVFGVTHIPRLEDWPVMPVEHIGFMLMPHGFFNCSPAVDVPPSVND CEQLKDSTVIPPKPIVPNPLIAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	0	1
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	1.4	0.8597
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	3.2	0.8558
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	4.9	0.8480
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	5.5	0.8488
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	5.5	0.8472
AT5G50000			Protein kinase superfamily pro...		Lus10042129 [exp]	9.8	0.8349
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	13.9	0.7905
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	14.5	0.8135
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	15.7	0.8422
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	16.1	0.7974

Compare expression of checked genes

Lus10004618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.