Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20300 238 / 4e-73 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT3G16620 182 / 4e-52 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT2G16640 180 / 3e-51 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT4G02510 173 / 9e-49 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT5G05000 82 / 8e-18 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 81 / 1e-17 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 78 / 7e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006471 [exp] 518 / 0 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 468 / 1e-161 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10005063 [exp] 187 / 1e-53 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 187 / 1e-53 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028706 [exp] 162 / 4e-45 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006048 [exp] 161 / 1e-44 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10034170 [exp] 150 / 9e-41 AT2G16640 374 / 1e-111 multimeric translocon complex in the outer envelope membrane 132 (.1) Lus10043414 [exp] 147 / 3e-40 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10010292 [exp] 79 / 8e-17 AT1G02280 390 / 1e-137 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063500 [exp] 287 / 1e-91 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 277 / 1e-87 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.009G131200 [exp] 194 / 6e-56 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 191 / 5e-55 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131300 [exp] 186 / 2e-53 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.010G014300 [exp] 156 / 7e-43 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G224900 [exp] 151 / 4e-41 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 148 / 3e-40 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014401 [exp] 73 / 6e-16 AT4G02510 0 / 1 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.014G109400 [exp] 76 / 8e-16 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family
Representative CDS sequence Show only first row Show all	>Lus10004619 pacid=23176364 polypeptide=Lus10004619 locus=Lus10004619.g ID=Lus10004619.BGIv1.0 annot-version=v1.0 ATGCCATCCTTCTCCCTTGCAGATTTACCTGCTAATTCCGAGGCAGCCTCGGCTCCTGATGCCTCACCCCAGCAAGTGGTTGAAGCTTCTTCTCAACCAT CAACGCACCACATTAAAGAAAGAGACACACATCCATTGGAAAATGTTGAACATCTCAAAATCAACTTCTTCCGTCTTCTTCGACGAATTGGGTTGCCTAT GGAAAGTGCTCTTGTAGCAAAGGTTTTGTATAGGATACACATAGCAACTTCAATTCGAGGTGAGCTGCCCAAGAGAGTGCGAAATATTAACGCCAAAACT ATTGCTGCAGCTCAAGAGGGTTCCGGAGCACCTGAATTAGACTTCTCCGTTAGAATACTGGTGCTTGGCAAAACAGGAGTTGGGAAGAGTGCTACTATAA ACTCTACCATCACCAGTGCATTTCAGCCAGCCACTAACCGGGTACAAGAGGTTACAGGTACTCTTAATGGGGTTAGAGTAACTTTTGTAGACACCCCTGG TTTTTTGCCACATTCTGGCAGCGGTATTAGACGAAACCTGAAGATCATGCGTTCAGTGAAGCGATTCATCAGCGAATCCCCTCCTCCAGACATTGTCTTG TTTGTTGAGCGCCTTGACCACTTGAATACGGGCTATAGCGACTCCCTCCTTCTGCAGCTAATGACGGATGTTTTTGGTGATGCTATTTGGTTTAACACCA TGATCATAATGACTCATGCTTCCTCTTCCCTGCCGGAAGGATCTACTGGAGGCCCGGTCAGCTACGAATCATACGTGTCTCGGTGTTCTCAGATGATGCT ATTTGGTCTAATGTTTCGTAGTTATAAACATTAA
AA sequence Show only first row Show all	>Lus10004619 pacid=23176364 polypeptide=Lus10004619 locus=Lus10004619.g ID=Lus10004619.BGIv1.0 annot-version=v1.0 MPSFSLADLPANSEAASAPDASPQQVVEASSQPSTHHIKERDTHPLENVEHLKINFFRLLRRIGLPMESALVAKVLYRIHIATSIRGELPKRVRNINAKT IAAAQEGSGAPELDFSVRILVLGKTGVGKSATINSTITSAFQPATNRVQEVTGTLNGVRVTFVDTPGFLPHSGSGIRRNLKIMRSVKRFISESPPPDIVL FVERLDHLNTGYSDSLLLQLMTDVFGDAIWFNTMIIMTHASSSLPEGSTGGPVSYESYVSRCSQMMLFGLMFRSYKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20300		Toc90	translocon at the outer envelo...		Lus10004619 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012472 [exp]	13.0	0.7884
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	20.4	0.8103
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	36.2	0.8016
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	40.8	0.7693
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	43.4	0.7926
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10005643 [exp]	56.1	0.7546
AT5G07940			unknown protein		Lus10034693 [exp]	64.0	0.7549
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	92.6	0.7704
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	103.1	0.6914
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	103.9	0.7600

Compare expression of checked genes

Lus10004619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.