Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26600 625 / 0 ARO4 armadillo repeat only 4 (.1) AT4G34940 207 / 3e-58 ARO1 armadillo repeat only 1 (.1) AT5G66200 203 / 9e-57 ARO2 armadillo repeat only 2 (.1) AT4G36030 171 / 2e-45 ARO3 armadillo repeat only 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026695 [exp] 1115 / 0 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10025059 [exp] 209 / 8e-59 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10028452 [exp] 191 / 1e-52 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10041905 [exp] 191 / 3e-52 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 181 / 2e-50 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 160 / 6e-45 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10037086 [exp] 125 / 9e-32 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10036897 [exp] 117 / 9e-28 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10037087 [exp] 90 / 2e-20 AT5G66200 221 / 1e-68 armadillo repeat only 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045500 [exp] 741 / 0 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 565 / 0 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.005G113000 [exp] 209 / 6e-59 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 202 / 2e-56 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 189 / 1e-51 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10004620 pacid=23176380 polypeptide=Lus10004620 locus=Lus10004620.g ID=Lus10004620.BGIv1.0 annot-version=v1.0 ATGGCGATCCCGCCGCCGCAGCCACAGGCGGACCAGCAGCAGCCGCCGCCGTTTCAGGACGAACTCCGCCTCCCAATCATACTCGCGGAACGGCTCCTCG CCGCCTCCGACGAGGCTGATTCGTTCAAGACAGAGTGCGCAGCAGTTGCTAGGCACGCCGATTACATCGTCGACAAGCTCCGTCTACTCGTCCGGTTCAT TTCCACTCCAACTCAGCCGGTCTACGAGCGTCCGGTCCGTCGAATCTCATCCGAAACGGGGAGAAACCTCGACCGGGCTCTAACCCTAGTCCGCAAGTGT AGACGGCGGAGCGTCTTCTCCAGAGTCGTGACGATAATCTCCGCCGCCGACTTCCGGAAAGTCCTCACCCTTCTCGAAGCTTCTGCTGGGGACGTGACGT GGCTGTGGAGCATGATGGAGTCGAACGGGAATGCGATGGCGCTCCCTCCGATCGCCAGCAACGATCCGATCCTTGCCTGGGTTTGGGTAGGGATAGCGTC GATTTATATGGCGCCACTGCCGGAGAAGATCGATGCAGCAAACCAATTAGCCTCCCTGGCGAAGGACAACGACAGAAACAAGCAGATCATCGTCGAGGAA GGAGGAGTCCCGCCGTTTCTGAAGCTGATTAAGGAGAATCACTCATCGGAGGCACAAATTTCCGGTGCGGCGGCCCTCTTCTACCTCTGTAACGACCGGG ATAGGGTCAGGTCAATCGCAGAGGAGAGTTCAGGGATACAGACGATTGTTAAAGCGCTGGCTGATTCTCCAATGAAGGTTCAAACATGGATGGCGAAACT GGTGGCAATGATGGCTGAGAACGATCCAATTTCGCAGGACTACTTTGCTAGGGAGCATGTGATTCGGCCATTGGTGACATTGCTTTCATTCGAAACGTTT GCAGACGATCAGATCAGTGTCCAGTCTGGTAAGCAGTCGATTCATTCTTTAGTCCAATTGAACAAGAACAAGGAGAAGGATCGTGATCGAGATAAGGATA GTGTGCATTACAAGCCGTTTGTGAGCTCGTTTTCGAGCTTTCATTCGGAGAGCGGAGTGGTGATGAATAGGGGAGCAGGAACCAGAAAGGAGAGGGAGAA TGAGGATCCAGTGATTAAACTCAAGCTGAAAGCGAACTGCGCCGAAGCATTATGGATGCTGTCGAAAGGAAGCATATCAAACAGCAAGCGAATCACTGAG ACAAAAGGACTCCTCTGTCTCGCAAAGCTTGTGGAGATCGGAGACGGAGAGTTACAGTACAACTGCTTGATGACTATAAAAGAGATCACATTCGCGGCAG AGTCAAACGCCGATCTCCGACGAGGAGCGTTCAAGACAAATTCGCCAGCAGCGAAAGCAGTAGTCGAGCAGTTACTCAAAGTGATAAAAGCTTCCACCAG TCCGAAACTGTTGATCGCGGCTCTACAGTCGATCGGGTCACTAGCTCGTACTTTCCCAGCTAGAGAAACGCGAGTGATCGGTCCGTTGGTGGGCCAGCTG AACCACCGGAGCCAGGAAGTGGCAGCCGAGGCAGCCATCGCGTTAGCAAAATTCGCATGGAGCGAGAACTTCTTATGTGAAGCGCATTCGAAGACGATCA TCGAGTTCCATGCGGTCCCGGCACTGATGAAGCTTTTGCGGGGTAGCGAGAAGGTGCAGATTCGAGCGTTGGTGCTGATGTGTCACCTAGCGGTGAATGC GGGGAACCACCGGGAGTTGGAGCCCGCGAGGGTGCTGACCGCGCTCGAAGGTGTCGACAAGATGGTGCTGGCTCAGTACAGTGACTTGAGGGAGTTGGTT GCTAAGGCTGTTTACCATATTAACCTTTACCACCGTGGCCCTCATTCTCAGAGGCTCACGTTCGTGATATAG
AA sequence Show only first row Show all	>Lus10004620 pacid=23176380 polypeptide=Lus10004620 locus=Lus10004620.g ID=Lus10004620.BGIv1.0 annot-version=v1.0 MAIPPPQPQADQQQPPPFQDELRLPIILAERLLAASDEADSFKTECAAVARHADYIVDKLRLLVRFISTPTQPVYERPVRRISSETGRNLDRALTLVRKC RRRSVFSRVVTIISAADFRKVLTLLEASAGDVTWLWSMMESNGNAMALPPIASNDPILAWVWVGIASIYMAPLPEKIDAANQLASLAKDNDRNKQIIVEE GGVPPFLKLIKENHSSEAQISGAAALFYLCNDRDRVRSIAEESSGIQTIVKALADSPMKVQTWMAKLVAMMAENDPISQDYFAREHVIRPLVTLLSFETF ADDQISVQSGKQSIHSLVQLNKNKEKDRDRDKDSVHYKPFVSSFSSFHSESGVVMNRGAGTRKERENEDPVIKLKLKANCAEALWMLSKGSISNSKRITE TKGLLCLAKLVEIGDGELQYNCLMTIKEITFAAESNADLRRGAFKTNSPAAKAVVEQLLKVIKASTSPKLLIAALQSIGSLARTFPARETRVIGPLVGQL NHRSQEVAAEAAIALAKFAWSENFLCEAHSKTIIEFHAVPALMKLLRGSEKVQIRALVLMCHLAVNAGNHRELEPARVLTALEGVDKMVLAQYSDLRELV AKAVYHINLYHRGPHSQRLTFVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10004620 [exp]	0	1
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10034119 [exp]	5.3	0.8797
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	8.6	0.8997
AT2G47485			unknown protein		Lus10028487 [exp]	14.0	0.8639
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	19.7	0.8707
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	22.2	0.8818
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	22.7	0.8975
AT1G25370			Protein of unknown function (D...		Lus10038942 [exp]	25.3	0.8965
AT3G15760			unknown protein		Lus10043269 [exp]	28.6	0.8390
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	32.5	0.8888
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	35.2	0.8669

Compare expression of checked genes

Lus10004620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.