Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70590 337 / 8e-117 F-box family protein (.1) AT1G18260 59 / 4e-10 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) AT1G73570 56 / 6e-09 HCP-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026694 [exp] 485 / 4e-175 AT1G70590 412 / 1e-144 F-box family protein (.1) Lus10009042 [exp] 45 / 5e-05 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1) Lus10009680 [exp] 44 / 8e-05 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045300 [exp] 397 / 2e-140 AT1G70590 434 / 2e-153 F-box family protein (.1) Potri.008G187200 [exp] 380 / 6e-134 AT1G70590 405 / 5e-142 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10004621 pacid=23176389 polypeptide=Lus10004621 locus=Lus10004621.g ID=Lus10004621.BGIv1.0 annot-version=v1.0 ATGGTGTTCTTGCAGTGGGGGAAGAGGTTCAAGCACGGCCGCGGAGGAGTGAAATCGGACGTCAACAAGGCTCTTGATTCGTTTCTGAAAGGAGCTGTTC GTGGGTCGAGCTTGGCGATGGTTGATGCGGGGCTGGTGTATTGGGAGATTGGAGAGAAGCAGAAGGCGATCGGATTGTATCGGAAGGCGGCGGAGCTTGG GGATCCGGCGGGGCAGTGTAATCTCGGGATTTATTACTTGCAAGCGAAGCCTTCGAACGAGACTGAAGCAGTGAAGTGGCTGTTTCGGGCTGCAATCGGA GGACATGTTCGAGCTCAGTACCAGCTTGGACTGTGTATGCATCAGGGCAGGGGAGTTGAGTGTAGTCTTCAAGAGGCAGCGAAATGGTATCTACGAGCTG CGAGAGGCGGCTACGTTAGAGCAATGTACAATGTGGCTCTCTGCTTCTCAGTAGGAGATGGTCTAACTCACAATCACCAGCAAGCAAGGAAGTGGATGAA GCGAGCTGCCGATCGAGGCCACAGCAAGGCTCAGTTCGAACACGGACTAGGCCTCTTCTCTGAAGGGGAAATGCTGAAAGCCGTGGTGTACCTAGAACTG GCGACTCGTGCAGGTGAAACGGCAGCTTCACATGTAAAGAATGTGATCTTCCAACAACTGTCTGCTCACTCGCGGGACCGGGCCATGCTTCTCGCTGACA GTTGGCGTGCAGTCTCGTCGTCGCATTGA
AA sequence Show only first row Show all	>Lus10004621 pacid=23176389 polypeptide=Lus10004621 locus=Lus10004621.g ID=Lus10004621.BGIv1.0 annot-version=v1.0 MVFLQWGKRFKHGRGGVKSDVNKALDSFLKGAVRGSSLAMVDAGLVYWEIGEKQKAIGLYRKAAELGDPAGQCNLGIYYLQAKPSNETEAVKWLFRAAIG GHVRAQYQLGLCMHQGRGVECSLQEAAKWYLRAARGGYVRAMYNVALCFSVGDGLTHNHQQARKWMKRAADRGHSKAQFEHGLGLFSEGEMLKAVVYLEL ATRAGETAASHVKNVIFQQLSAHSRDRAMLLADSWRAVSSSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70590			F-box family protein (.1)		Lus10004621 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	2.0	0.8199
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10040685 [exp]	2.8	0.8396
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	3.5	0.8018
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	7.5	0.7724
AT1G26920			unknown protein		Lus10012840 [exp]	8.5	0.7604
AT4G34760			SAUR-like auxin-responsive pro...		Lus10041921 [exp]	11.0	0.7258
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	11.2	0.7860
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	12.0	0.7882
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	19.3	0.7088
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	21.4	0.7633

Compare expression of checked genes

Lus10004621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.