Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70580 867 / 0 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT1G23310 864 / 0 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G72330 466 / 1e-160 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 458 / 4e-157 ALAAT1 alanine aminotransferas (.1) AT5G51690 91 / 3e-19 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT2G20610 87 / 5e-18 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT1G62960 87 / 9e-18 ACS10 ACC synthase 10 (.1) AT4G26200 82 / 2e-16 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G11280 82 / 2e-16 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT4G28420 80 / 6e-16 Tyrosine transaminase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026692 [exp] 976 / 0 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10006203 [exp] 896 / 0 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10036850 [exp] 892 / 0 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10037455 [exp] 452 / 7e-155 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 451 / 3e-154 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10015023 [exp] 91 / 3e-19 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10038899 [exp] 91 / 4e-19 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10024673 [exp] 88 / 3e-18 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10008579 [exp] 88 / 3e-18 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045100 [exp] 907 / 0 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.008G187400 [exp] 901 / 0 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.003G072600 [exp] 457 / 4e-157 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.001G162800 [exp] 454 / 3e-156 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.015G132100 [exp] 87 / 4e-18 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.001G099400 [exp] 84 / 3e-17 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.018G067000 [exp] 82 / 1e-16 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.003G132300 [exp] 82 / 2e-16 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 82 / 3e-16 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.003G117700 [exp] 82 / 3e-16 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10004623 pacid=23176359 polypeptide=Lus10004623 locus=Lus10004623.g ID=Lus10004623.BGIv1.0 annot-version=v1.0 ATGGCGCCAAAGGCTTTGGACTATGAATCCCTGAATGAAAACGTGAAGAAGGTTCAGTATGCCGTGAGAGGCGAGCTTTACCTCCGAGCTTCTGAGCTCC AGAAGGAAGGAAAGAAGATTATTTTCACAAATGTGGGAAACCCTCATGCTCTTGGACAAAAGCCACTGACATTTCCTCGCCAGGTGGTGGCTCTTTGCCA AGCTCCGTTTCTACTCGATGATCCTAACGTGGGACTCATGTTCCCGGCAGATGCAATCGCAAAGGCTAAACACTATCTTTCCTTGACTTCTGGTGGTTTA GGTGCGTACAGCGATTCTCGAGGTATGCCAGGAGTTAGGAAGGAGGTTGCGGACTTTCTTCTAAAGCGTGATGGATATCCGAGTGACCCGGAATTGATAT TTCTCACTGATGGTGCCAGCAAAGGTGTGATGCAAATCTTGAGCACAATTATTCGAGGCAATGGCGATGGGATCCTGGTTCCAGTGCCACAATACCCGCT GTACTCTGCAGCAATCAGTCTCTTTGGGGGAACCCTTGTGCCATATTACTTGGAGGAGACGGCAAACTGGGGGCTAGATGTTAATGACCTGCGGAGTGCA GTTTCTCAAGCTCGCTTCAAAGGCATATCTGTGAGAGCAATGGTGATCATCAATCCGGGGAATCCCACCGGCCAGTGTCTTAGCGAAGCTAACTTGAGGG AGATATTGCGTTTCTGCCATCAAGAAGACTTGGTCCTTCTTGGAGATGAGGTTTACCAGCAGAATGTCTACCAAGACGAGCGCCCCTTCGTTAGCTCGAA AAAGGTACGCACTTTCCCTTTGGCTAATGGTATGATTTACCTTACGAGCGGATCACTAATTCTCTGTTTCGCCTACGAACTTGTGAAGGTGTTGATGGAT ATGGGTCCGCCTTATAGCAAGGAGGTTCAGCTCGTTTCTTTCCATACCGTGTCTAAAGGATTCTTCGGTGAGTGTGGGCAGCGAGGTGGATACTTCGAGA TGACCAACATTCCTCCACAGACAGTTGATGAGATCTACAAGGTTGCATCAGTATCCCTCAGTCCTAATGTCCCTGCCCAGATATTCATGGGTCTTATGGT GAACCCACTCCAACCCGGGGACATCTCGTACGAGCAGTATATTCGTGAAAGCAAGGGCATCCTGGAATCACTGAGGAAAAGGGCTAGGATCATGACTGAT GGCTTCAACAGCTGCCGAAATGTAGTCTGCAACTTCACCGAAGGTGCAATGTATTCGTTCCCACAAATACGGTTGCCTCCCAAGGCTATCGCGGCTGCCA AGAGCGCAGGCAAAGTTCCTGATGTCTTCTACTGCCTCAAGCTACTCGAAGCTACAGGCATCTCCACCGTCCCTGGCTCAGGATTCGGACAGAAAGAAGG GGTTTTCCATCTGAGGACAACAATCCTACCGGCAGAAGAGGACATGCCGGCAATCATGGACAGTTTCAAGAAATTCAACGACGAGTTCATGGAGCAGTAT GATGACCACAAGGGCTACTCAAGGATGTAA
AA sequence Show only first row Show all	>Lus10004623 pacid=23176359 polypeptide=Lus10004623 locus=Lus10004623.g ID=Lus10004623.BGIv1.0 annot-version=v1.0 MAPKALDYESLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLMFPADAIAKAKHYLSLTSGGL GAYSDSRGMPGVRKEVADFLLKRDGYPSDPELIFLTDGASKGVMQILSTIIRGNGDGILVPVPQYPLYSAAISLFGGTLVPYYLEETANWGLDVNDLRSA VSQARFKGISVRAMVIINPGNPTGQCLSEANLREILRFCHQEDLVLLGDEVYQQNVYQDERPFVSSKKVRTFPLANGMIYLTSGSLILCFAYELVKVLMD MGPPYSKEVQLVSFHTVSKGFFGECGQRGGYFEMTNIPPQTVDEIYKVASVSLSPNVPAQIFMGLMVNPLQPGDISYEQYIRESKGILESLRKRARIMTD GFNSCRNVVCNFTEGAMYSFPQIRLPPKAIAAAKSAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMDSFKKFNDEFMEQY DDHKGYSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10004623 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10026692 [exp]	2.4	0.8877
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	3.5	0.8676
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	8.4	0.8590
AT3G44620			protein tyrosine phosphatases;...		Lus10043376 [exp]	12.7	0.7975
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	16.1	0.8325
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	18.0	0.8604
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	19.6	0.8628
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10022301 [exp]	21.0	0.8260
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	22.8	0.8554
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	34.9	0.8306

Compare expression of checked genes

Lus10004623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.