Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10710 170 / 4e-50 PHS1 poor homologous synapsis 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026691 [exp] 294 / 8e-101 AT1G10710 133 / 4e-38 poor homologous synapsis 1 (.1.2) Lus10026690 [exp] 258 / 2e-85 AT1G10710 57 / 2e-09 poor homologous synapsis 1 (.1.2) Lus10018084 [exp] 72 / 3e-14 AT1G10710 88 / 3e-20 poor homologous synapsis 1 (.1.2) Lus10042079 [exp] 69 / 6e-14 AT1G10710 89 / 3e-21 poor homologous synapsis 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044800 [exp] 181 / 8e-55 AT1G10710 201 / 2e-62 poor homologous synapsis 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004624 pacid=23176392 polypeptide=Lus10004624 locus=Lus10004624.g ID=Lus10004624.BGIv1.0 annot-version=v1.0 ATGGCGGGATGCTTGGCGGTGGTGCTGCATCTGAACGAGGAGGAGGAGGCGACTGAGAGATCGGGGTCCGCCGCCGCAGAATGGAGCTGGCAAGTCATGT TCTCTCGATTCGTCCATTTCCCCGCCGTTTCTGGCTCGTCCCATCCGTTGCTGACTCCTGCGCGAGCCAAAAGGAATGGCGGCGTTCGTGGAATCTGGCT ATCTTCTTCTTCCCCGACTGCTATTCTGCAGCTTGTCGTCGATCGTTCCTGCTCGGACGCGAAGATCTCTGTATCTCTTGGAGGAAGAGTGCTTGAAGAG CACTATGTTTCGAAGCTGCACTTTTCATGGCCTCAGGTGTCCTGCACCGCTGGATATCCTCCTAGGGGAACAAGATCGGTTGTGGTCAGCTTCAAAGATT CTGCTGGCTTGATCCAGAAATTCGCTTTCCAGTTCTCATCAGTTTCAGAATCCGCGTCATTCATCGCCACTTTGAAGGTTACTGAAGATCTCGGAGGGGA ATCGAACACCATGTCACCTTTCAACGCTCTATCTCCTGAGCTTCCACCGAGTATTTCGACCCACTCTGCAATAATGTCAACTGAAATGCCACTATCTAGA GATTTCGGAGAGGAATCGAACACCATTTCACCCTTCAACGCCTACTCTCCTGAGCTTCCACCGAGTATTTCGACACACTCTGCAATAATGTCAACTGAAC TGCCAGTAGCTAGAGATTTCGAAAAGGAATCGAACACCATGTCACCCTTCAAGGCTTACTCTCCTGAGCTTCCACTGAACATTAGCAATGAAGTTCAACA AGATCCAGTTCCTGAGGACACATCACTAACTCATATCAGCAACAACAACAACAACAACAACAACATGAGTACCGTGAAAATGCCTCCTAGCTTCACATCT TTGCTTAGTAACTGCTGCCCAAAGATCCAACAAGATATGCTGTTCAAAGTGGAGAAAATCTTCGGAGAAATTGGAGGCGACTTGATCCTTTAA
AA sequence Show only first row Show all	>Lus10004624 pacid=23176392 polypeptide=Lus10004624 locus=Lus10004624.g ID=Lus10004624.BGIv1.0 annot-version=v1.0 MAGCLAVVLHLNEEEEATERSGSAAAEWSWQVMFSRFVHFPAVSGSSHPLLTPARAKRNGGVRGIWLSSSSPTAILQLVVDRSCSDAKISVSLGGRVLEE HYVSKLHFSWPQVSCTAGYPPRGTRSVVVSFKDSAGLIQKFAFQFSSVSESASFIATLKVTEDLGGESNTMSPFNALSPELPPSISTHSAIMSTEMPLSR DFGEESNTISPFNAYSPELPPSISTHSAIMSTELPVARDFEKESNTMSPFKAYSPELPLNISNEVQQDPVPEDTSLTHISNNNNNNNNMSTVKMPPSFTS LLSNCCPKIQQDMLFKVEKIFGEIGGDLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	0	1
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10012335 [exp]	7.3	0.8274
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006385 [exp]	8.9	0.7721
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	12.4	0.8216
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	21.8	0.8104
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	26.4	0.8114
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	27.1	0.7600
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10006315 [exp]	27.4	0.8005
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	28.2	0.7975
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	40.0	0.8083
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	43.4	0.7441

Compare expression of checked genes

Lus10004624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.