Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 346 / 2e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 290 / 2e-89 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT5G38560 226 / 9e-65 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G02010 225 / 2e-64 Protein kinase superfamily protein (.1) AT3G20530 216 / 7e-64 Protein kinase superfamily protein (.1) AT1G10620 219 / 5e-62 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G61860 211 / 6e-62 Protein kinase superfamily protein (.1) AT5G18610 213 / 2e-61 Protein kinase superfamily protein (.1.2) AT3G24790 207 / 4e-61 Protein kinase superfamily protein (.1) AT3G23750 218 / 9e-61 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026689 [exp] 1166 / 0 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 488 / 4e-166 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 334 / 3e-105 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 333 / 4e-105 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 286 / 3e-88 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035301 [exp] 285 / 1e-87 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 282 / 5e-83 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022488 [exp] 223 / 4e-64 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10040050 [exp] 214 / 2e-63 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187500 [exp] 658 / 0 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 620 / 0 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 617 / 0 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 340 / 4e-108 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 334 / 2e-106 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 281 / 5e-86 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 281 / 6e-86 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.002G226600 [exp] 279 / 3e-85 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G259600 [exp] 228 / 1e-65 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 215 / 1e-63 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10004625 pacid=23176382 polypeptide=Lus10004625 locus=Lus10004625.g ID=Lus10004625.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTAACAACAATCTTCCTCATCATCATCACAATCCCAAACTTCCTCTTCATCACCATCGCCAGCCAAAAATCAATACCCCCAACACCACCAT TACAACCGAACATGTTCCCCTTCCCATGCTCCCAATCCCTGCCAACCTGCAAAGCCTCCCTATACCACTCCTTCTCCGGCCACAACCAACAACAGCTCTC GTCCTTCTACTCCGTCCCCGCCTCCGACATCCAACCGGTCCCTCGACACCGCCGTCAAGACTACCTCATCACCGTCCCTTGCTCATGCCAAACCGTAACC ACAACCACTGCCTACTTCTACCCCATCAGCTATACTGTCCAGAAAAAGGACACGTTCTCCAACGTTTCGAAGGACATCTACAGCGGCCAGCTCTGGGACG AGGGAAATGAAGAGCAGAAGTTCGTCGCTGGAAATAATGTGACGTTGAATTTGTTATGTGGGTGTGAGGAAGAAGGAGATGGCAACGGGGATCAGATTGT GACGTATACTGTTGAGAATGGTGATACTTTGTCTGATATTGGTCAGAGGTTTCATGCTAGCTTGCCCAGCATGGTGAGCTTGAATCAACTTCTGGAGAAT AACACTGTGTTTATTGATATCGGTTGGGTTCTTTATGTCCCTCGTGGCTCTAAAGGAGTTGGTGGGGTTGGGGGTGGTGCTGATCAGCCGTCCTCTGAAT CAAGCGCCAAGAAGTTGACGGCGTTGATCATAGTCCTGCCGTTGATCACGGCGTTCCTTCTGGCAATCGCAACATTCATCTTCCTCTACCGGAGGAAGAG ACAGAAACAGAAAATGCCGCCGGCGGACAAACAGAAGGGTGCTGCTGCAAAGTTCAGGAGCATCAGCACTTTCAGAACAGCTGGCTCTTCAATCCCCAAG TCGTTCAAGGAATTCACAGAAGATTACGAGAAAGGGATGATTGACCCGGAAGGACCGGTGCTGTACAGCATAGAGGAGATTCAAGAAGCCACCAATGACT TCGATGAGTCCAAGAACATCGGCGAAGGTGGATATGGTCTCGTGTTCTTTGGCGTCTTGCGTGGAAAGGAGGTGGCTATTAAGGTGATGAGATCCAACAA ATCGAAAGAATTCTATGCAGAGGTTAACGTTTTGTGTAAGATTCATCACATCAACGTTGTGGAGCTATTGGGATATGCAAGTGACGATGATCATTTCTTC TTGGTCTATGAATATGTCCGCAATGGATCCCTCAGTGACCATCTCCATGAACCATTGCACAAAGGTTACCAGCCGCTTTCTTGGACAGCAAGAACACAGA TCGCAGTGGATGCTGCAAAGGGAATAGAGTACATCCATGACCATACCAAATCCAGATACGTCCATAGAGACATCAAGACCACCAACATCCTCCTCAACGA GTATCTTCGAGCCAAGGTTGCCGATTTCGGGCTGGCAAAGCTGGTGGAGAGGAGCAGCGTGGATGAACTGATAGCCACAAGGCTGGTTGGGACTCCAGGC TACCTTCCTCCAGAGTCGGTGAAGGAGCTGCAGGTGACTTCGAAAACAGATGTGTTTGGATTCGGCGTAGTACTGGCAGAGCTGATTACAGGGAAAAGAG CTCTGGTTCGTGACAACAACGAACCTAGCAGGCTCAAATCTCTCATCACCACTCTGGCCGAGGTGTTCGAAAGCGAAGATCCACCCACAGCTCTGGAAAA AGTCGTAGACTTGAACCTTCGAAGCGGCTACCCACTCGATGACGTCTACAAGATGGCAGAGATAGCACAATGGTGTCTAAGCGAAGAGGCGGCAAACAGG CCGGAGATGAGGGACGTCGTGGGGCCGCTAGCTCAAATCGTCACATCTTCCGTTGAATGGGAAGCCTCCATGGGCGGTGATAGCCAAGTTTTTAGTGGCA TTTTCAATGGAAGATAG
AA sequence Show only first row Show all	>Lus10004625 pacid=23176382 polypeptide=Lus10004625 locus=Lus10004625.g ID=Lus10004625.BGIv1.0 annot-version=v1.0 MASLTTIFLIIITIPNFLFITIASQKSIPPTPPLQPNMFPFPCSQSLPTCKASLYHSFSGHNQQQLSSFYSVPASDIQPVPRHRRQDYLITVPCSCQTVT TTTAYFYPISYTVQKKDTFSNVSKDIYSGQLWDEGNEEQKFVAGNNVTLNLLCGCEEEGDGNGDQIVTYTVENGDTLSDIGQRFHASLPSMVSLNQLLEN NTVFIDIGWVLYVPRGSKGVGGVGGGADQPSSESSAKKLTALIIVLPLITAFLLAIATFIFLYRRKRQKQKMPPADKQKGAAAKFRSISTFRTAGSSIPK SFKEFTEDYEKGMIDPEGPVLYSIEEIQEATNDFDESKNIGEGGYGLVFFGVLRGKEVAIKVMRSNKSKEFYAEVNVLCKIHHINVVELLGYASDDDHFF LVYEYVRNGSLSDHLHEPLHKGYQPLSWTARTQIAVDAAKGIEYIHDHTKSRYVHRDIKTTNILLNEYLRAKVADFGLAKLVERSSVDELIATRLVGTPG YLPPESVKELQVTSKTDVFGFGVVLAELITGKRALVRDNNEPSRLKSLITTLAEVFESEDPPTALEKVVDLNLRSGYPLDDVYKMAEIAQWCLSEEAANR PEMRDVVGPLAQIVTSSVEWEASMGGDSQVFSGIFNGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	0	1
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	4.5	0.7506
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	11.1	0.7556
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	11.5	0.7297
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10001832 [exp]	14.3	0.7103
AT3G55390			Uncharacterised protein family...		Lus10005154 [exp]	18.2	0.6866
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	19.2	0.7205
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	25.1	0.7082
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	26.1	0.7049
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	29.8	0.6525
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	31.7	0.6748

Compare expression of checked genes

Lus10004625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.