Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 827 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 788 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 373 / 2e-126 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 266 / 1e-84 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 169 / 5e-48 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT4G35410 42 / 0.0003 Clathrin adaptor complex small chain family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026688 [exp] 874 / 0 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 780 / 0 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 644 / 0 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 567 / 0 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 356 / 7e-120 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10030961 [exp] 340 / 2e-113 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10024548 [exp] 253 / 3e-79 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 242 / 9e-75 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 174 / 6e-50 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044700 [exp] 854 / 0 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 847 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 364 / 5e-123 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 360 / 2e-121 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 257 / 4e-81 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 170 / 3e-48 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 167 / 4e-47 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 80 / 1e-17 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.012G052000 [exp] 44 / 5e-05 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 42 / 0.0003 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10004626 pacid=23176395 polypeptide=Lus10004626 locus=Lus10004626.g ID=Lus10004626.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTTTCCGCTCTCTTCCTCCTCGACATTAAGGGCCGTGTTCTGGTTTGGCGCGATTACCGTGGCGACGTCACCGCTCTCCAGGCTGAGAAAT TCTTCACCAAGCTCATCGAGAAAGAGGGAGATCCACAGTCGCAAGATCCTGTAGTGTACGATAATGGAGTCAGTTACATGTTCATACAGCATAGCAATGT TTACCTCATGACTGCTGCGCGGCAGAACTGCAATGCGGCCAGCCTTCTCTCATTTCTGCACCGTGTAGTTGATGTATTTAAGCATTACTTTGAAGAGCTG GAAGAGGAATCACTGAGAGACAACTTTGTTGTAGTGTATGAGTTGCTAGATGAAATGATGGACTTTGGGTACCCTCAGTATACCGAAGCGAAAATTCTGA GTGAGTTTATCAAGACGGATGCTTACAGAATGGAAACTACACAGAGGCCTCCAATGGCTGTAACAAATGCGGTGTCTTGGCGCAGTGAAGGGATATCGTA CAAGAAAAATGAAGTTTTCTTGGATGTGGTGGAGAGTGTTAATATACTTGTTAATAGCAACGGGCAAGTGATTAGATCAGATGTTGTTGGAGCGTTGAAG ATGAGAACTTATTTGAGTGGTATGCCTGAGTGCAAGCTTGGCCTAAATGATAGAGTATTGCTGGAAGCTCAAGGTCGGGCAACTAAGGGGAAAGCTATTG ACTTGGAAGACATCAAATTTCATCAGTGTGTTCGTTTGGCTCGATTCGAGAACGATAGAACTATATCCTTCATACCTCCTGATGGGTCTTTTGATCTGAT GACTTACCGACTTAGTACTCAGGTCAAGCCTTTGGTTTGGGTGGAAGCTCAAGTCGAAAGGCATTCAAGAAGTAGGGTCGAGATTATGGTAAAGGCTAGA AGTCAGTTCAAGGAACGAAGCACAGCAACAAATGTGGAGATCGAGTTGCCTGTTCCTGCCGATGCTTCCAATCCTAACATCAGAACATCGATGGGATCAG CATCGTATGCCCCTGAACACGATGCTTTGATGTGGAAAATCAAATCTTTCCCCGGTGGAAAGGAGTACATGTTAAGGGCAGAGTTCAATCTCCCCAGTAT AACAGCTGAAGAAGCAGTTCCAGAGAGAAAAGCTCCTATTCGCGTCAAATTCGAGATTCCATATTTCACCGTTTCAGGAATTCAGGTCCGGTACCTAAAG GTGATTGAGAAAAGCGGTTACCAAGCCCTTCCATGGGTGCGATACATAACAATGGCCGGTGAGTATGAACTTCGGCTAATCTGA
AA sequence Show only first row Show all	>Lus10004626 pacid=23176395 polypeptide=Lus10004626 locus=Lus10004626.g ID=Lus10004626.BGIv1.0 annot-version=v1.0 MAAVSALFLLDIKGRVLVWRDYRGDVTALQAEKFFTKLIEKEGDPQSQDPVVYDNGVSYMFIQHSNVYLMTAARQNCNAASLLSFLHRVVDVFKHYFEEL EEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMETTQRPPMAVTNAVSWRSEGISYKKNEVFLDVVESVNILVNSNGQVIRSDVVGALK MRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLVWVEAQVERHSRSRVEIMVKAR SQFKERSTATNVEIELPVPADASNPNIRTSMGSASYAPEHDALMWKIKSFPGGKEYMLRAEFNLPSITAEEAVPERKAPIRVKFEIPYFTVSGIQVRYLK VIEKSGYQALPWVRYITMAGEYELRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	1.0	0.8390
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10011325 [exp]	2.4	0.7940
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	2.8	0.8046
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	3.2	0.8003
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	5.5	0.8066
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10033122 [exp]	9.8	0.7709
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	10.1	0.8085
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	10.8	0.7668
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	13.2	0.7797
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	14.5	0.7628

Compare expression of checked genes

Lus10004626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.