Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19640 370 / 2e-126 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT1G26760 58 / 4e-09 SDG35, ATXR1 SET domain protein 35 (.1) AT5G06620 52 / 3e-07 SDG38, ATXR4 SET domain protein 38 (.1) AT2G17900 52 / 4e-07 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT3G21820 49 / 3e-06 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026687 [exp] 607 / 0 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10029712 [exp] 61 / 6e-10 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10031573 [exp] 54 / 2e-07 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10015102 [exp] 52 / 5e-07 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10013535 [exp] 49 / 2e-06 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10037155 [exp] 50 / 3e-06 AT1G26760 573 / 0.0 SET domain protein 35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071700 [exp] 434 / 1e-151 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.005G173100 [exp] 61 / 4e-10 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.006G196566 [exp] 52 / 1e-07 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.008G089500 [exp] 53 / 2e-07 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 48 / 8e-06 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10004628 pacid=23176383 polypeptide=Lus10004628 locus=Lus10004628.g ID=Lus10004628.BGIv1.0 annot-version=v1.0 ATGTTGAAGGTTGAAGAAATACAAGGGAAAGGAAGAGGTTTGGTATCAACTCAGCCACTAAAGGGTGGCCAAATTGTGCTCATAGATTCTCCCATCCTGC TTTACTCCGCTAAGCCTTTGAATCCACAGCAGCATCATTCTTCCTCATCCAACTCGATTCTTTATTGCGACAAATGCTTTAGAAAGATACAATCACCTTC AGCTGCATTACCATGCCCTTCCTGCTCTCACCATCATCGTTTCTGCAGCTCTAACTGCCTCTCCTCCCACTCTCAATGGGCGTGCCAGTCTCTATCTCGA CTCCGCGAATGCCCCGATTTGATCCTCCATCAACCGCTGGATCGCCAGGTACAAGCTCGGTATCTCATTGCTGCGTACAATTTGGCAATTGTGAACCCTT CCCAGTTCCAAGCTCTGCAGTCTCTTCAATCCGTCACTCAAACCCATGATGACATGGCATCAGCTGCCTATTTCCTGCATTCGTTAATCTCGTCTATTTG TCCACCTCCTCCATTACAAGGGTTTGTCTTTTCGTTGGACCTGACCTTGTCTCTCCTGGTGAGGGACAAGCTTAACGCCTTTGGTTTGATGGAACCCTTG GATAATGGCGGGGAGAGATCAGTCAAGGCTTATGGTATCTACCCGAGGGCTTCGATGTTCAACCACGATTGCCTCCCGAATGCTTGCAGGTTCGATTACG TTGACTCGGACATGAGTTCTGATACAAATACCGACATCATAGTTCGAATGATTCACGATGTGCCTCAGGGTAGAGAGATCTGTTTAAGTTACTTCCCGGT CAATGAGAACTATTCTTCAAGGCAGAAAAGGTTGCTGGAGGATTACGGGTTCTCCTGTGACTGTGATCGTTGCAAAGTCGAAGCAAATTGGTCTGATGAG GAGGATGAGAATGAGACGGACCAGTCAATGGAGGAGGAGGAGAACGATGAAGAAGACGAGTCAATGGATGCAGATGAAGAAGATAACAAAGCCGGTCAGG ACTTCCCTCATGCTTATTTCTTCGTGCTATACATGTGTAACGTCGAGAATTGTTGGGGCACGCTAGCTCCTTTGCCTCCGACATCAGATGCTGGTAATTC GTCGAATGTCATGGAGTGTAATGTATGTGGTAATCTTAAACCTGACGAGCTTCTTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10004628 pacid=23176383 polypeptide=Lus10004628 locus=Lus10004628.g ID=Lus10004628.BGIv1.0 annot-version=v1.0 MLKVEEIQGKGRGLVSTQPLKGGQIVLIDSPILLYSAKPLNPQQHHSSSSNSILYCDKCFRKIQSPSAALPCPSCSHHHRFCSSNCLSSHSQWACQSLSR LRECPDLILHQPLDRQVQARYLIAAYNLAIVNPSQFQALQSLQSVTQTHDDMASAAYFLHSLISSICPPPPLQGFVFSLDLTLSLLVRDKLNAFGLMEPL DNGGERSVKAYGIYPRASMFNHDCLPNACRFDYVDSDMSSDTNTDIIVRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFSCDCDRCKVEANWSDE EDENETDQSMEEEENDEEDESMDADEEDNKAGQDFPHAYFFVLYMCNVENCWGTLAPLPPTSDAGNSSNVMECNVCGNLKPDELLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	0	1
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	1.7	0.9733
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	2.8	0.9661
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	4.2	0.9664
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	4.7	0.9670
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	5.5	0.9644
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	5.5	0.9643
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	7.1	0.9553
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	8.1	0.9517
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	11.6	0.9596
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10039847 [exp]	12.3	0.9171

Compare expression of checked genes

Lus10004628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.