Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 466 / 3e-161 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 454 / 9e-157 O-fucosyltransferase family protein (.1) AT1G14020 399 / 4e-135 O-fucosyltransferase family protein (.1) AT2G03280 397 / 8e-135 O-fucosyltransferase family protein (.1.2) AT2G37980 314 / 2e-100 O-fucosyltransferase family protein (.1) AT5G64600 310 / 3e-100 O-fucosyltransferase family protein (.1) AT1G22460 311 / 4e-100 O-fucosyltransferase family protein (.1) AT3G54100 312 / 1e-99 O-fucosyltransferase family protein (.1) AT5G35570 300 / 5e-95 O-fucosyltransferase family protein (.1) AT5G01100 299 / 7e-95 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036832 [exp] 468 / 4e-162 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 461 / 4e-159 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 460 / 6e-159 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 460 / 8e-159 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 457 / 6e-158 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 457 / 7e-158 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 452 / 1e-155 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10036833 [exp] 452 / 1e-155 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1) Lus10026685 [exp] 417 / 2e-145 AT5G15740 229 / 8e-72 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113500 [exp] 467 / 7e-162 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 466 / 1e-161 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 453 / 1e-156 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 450 / 6e-155 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 416 / 4e-142 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 407 / 2e-138 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 344 / 3e-113 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 341 / 3e-112 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 320 / 5e-104 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 315 / 9e-100 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004629 pacid=23176367 polypeptide=Lus10004629 locus=Lus10004629.g ID=Lus10004629.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAGGCAAAGGTTGATGAGGAGGATGAACTATCCGAAGCTGCTGCAGATACTCAATCTCGACCGAATTTAGAGGCCAAGTTCTGCATTCTGA TGGCAGCAATCATGGTGGTTTTATTTGTCCGTACAATTGAGTTAGCAACCTTGAAGGAAAGATTCGTTTCGCCAATGCCATGGCGTGCAGTGATTCCAAC AAGAGCGTATCGAAACAATGGTTACTTGATGGTCTCCTGCAATGGCGGTCTGAACCAGATGAGGACCGGTATATGTGACATAGTTGCCATAGCTAGGTTC TTGAATGTCACACTTATAATTCCTGAGCTGGACAACACATCCTATTGGCATGATGACAGCTCATTCGACGATATATTCGATACAGATCACTTCATTCGAT CTTTAGCAAATGAGGTTACAATACTGAAAGCCCTGCCTTTAGAGGAACAGCAGATTCTGGAATCTAAATCTCTACATTCTATAGAACCGATCTTTTTCCA GAACATGTCGTATTACTATCAAAAGATTCTTCCTCAGATACAAAGGCACCGAGTTCTTCATTTCCTTAAAGCAGATGGGATTATCGCCAACAACGGACTT CCTCGAGAGGTTCAGAAGATGAGATGTAGAGCCTGCTATGAAGCATTGCGATTCAGCCCGGTTATTGAAGAGATGGGGAGAAAAATCGTCCGAATTTTGC AGCAGAAGGGTCCGTTTCTAGCTCTTCATCTGCGATACGAGATCGATATACTCTCGTTTACAGGCTGCATTCTCGGTTTGTCTCATGATCAGATTGTAGA GGTGATGAATCTAAGGAAATCCTATCCACAGTGGAAGAGCATAGCTGATCCGAGGAAGAAAAGGCAAGCCGGGTTGTGCCCTTTAACACCGGAAGAAATC GCATTGGCATTGCAGGCTCTGGGAATCGACAGAAGCATTCAGATCTACATTGCTTCTGGAGAAATTTACAAGGGAGAATCCATGATGGGACACCTGAACG AAGCTTTCCCGAATCTGGTCAGGAAGGAGACGCTACTTGATCGGTCGAGTCTCGAACCATTTCGAAACCACGCCAATGCAATGGCAGCTATGGATTACAT CGTTGCAGTGGAGAGTGACATCTTTGTCCCAACATTTGATGGGAACATGGCGTTTGCTGTTGAAGGTCATCGAAGGTATCTAGGGTTCAGGAAAACCATC AAGATAAACAGGAAACTGCTGGTAAGCTTGTTTGATCAGTACAAGATCGGAAAGCGTAGCTGGAGCGAGTTCTGCTTCGTAATGAAGGCGGCACATGCCG GAAATCGTATGGGAAGTTCTGCAGAAAGATTGCAGATCCCGGACGAACTGTTCAAGGAGGACAGTTTCTACTCGAACCCGCAAGAATGCCTCCCACACTC GGCATCATCGCCCTGA
AA sequence Show only first row Show all	>Lus10004629 pacid=23176367 polypeptide=Lus10004629 locus=Lus10004629.g ID=Lus10004629.BGIv1.0 annot-version=v1.0 MAEKAKVDEEDELSEAAADTQSRPNLEAKFCILMAAIMVVLFVRTIELATLKERFVSPMPWRAVIPTRAYRNNGYLMVSCNGGLNQMRTGICDIVAIARF LNVTLIIPELDNTSYWHDDSSFDDIFDTDHFIRSLANEVTILKALPLEEQQILESKSLHSIEPIFFQNMSYYYQKILPQIQRHRVLHFLKADGIIANNGL PREVQKMRCRACYEALRFSPVIEEMGRKIVRILQQKGPFLALHLRYEIDILSFTGCILGLSHDQIVEVMNLRKSYPQWKSIADPRKKRQAGLCPLTPEEI ALALQALGIDRSIQIYIASGEIYKGESMMGHLNEAFPNLVRKETLLDRSSLEPFRNHANAMAAMDYIVAVESDIFVPTFDGNMAFAVEGHRRYLGFRKTI KINRKLLVSLFDQYKIGKRSWSEFCFVMKAAHAGNRMGSSAERLQIPDELFKEDSFYSNPQECLPHSASSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10004629 [exp]	0	1
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	3.5	0.8969
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	3.6	0.8406
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	8.1	0.8491
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	9.3	0.8736
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	9.5	0.8510
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	11.0	0.8730
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	17.1	0.8684
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	17.6	0.8629
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	19.8	0.8355
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	20.0	0.8575

Compare expression of checked genes

Lus10004629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.