Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 225 / 6e-72 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G08130 123 / 5e-32 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G38860 116 / 3e-30 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT2G20180 60 / 5e-10 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT2G24260 59 / 8e-10 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G28790 59 / 2e-09 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G28815 57 / 3e-09 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G09530 58 / 4e-09 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G28800 56 / 1e-08 bHLH bHLH056 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 55 / 2e-08 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026684 [exp] 547 / 0 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 150 / 4e-41 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10034358 [exp] 134 / 2e-36 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10013502 [exp] 136 / 4e-36 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10005091 [exp] 132 / 5e-35 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10022833 [exp] 62 / 3e-10 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 61 / 5e-10 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 56 / 2e-08 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022032 [exp] 55 / 3e-08 AT4G09820 181 / 8e-51 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112000 [exp] 295 / 3e-99 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 289 / 9e-97 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.015G048000 [exp] 175 / 8e-50 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.012G065000 [exp] 172 / 3e-49 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G112900 [exp] 148 / 7e-42 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 146 / 2e-41 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.013G001300 [exp] 61 / 5e-10 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 61 / 5e-10 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.005G207200 [exp] 60 / 8e-10 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.005G001800 [exp] 59 / 2e-09 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004630 pacid=23176360 polypeptide=Lus10004630 locus=Lus10004630.g ID=Lus10004630.BGIv1.0 annot-version=v1.0 ATGAGAGGGAAAGGGAATCAGAATCATCAGGAGGAAGAAGAGTACGATGAGGAAGAATTGGTGGTTGGTTCCAGAAAAGATGGAGAAGGAGCTCCTTCTT CCAATGTGTCTGCAACTACCAGAAACAGTGCTAATAACACCTATAGTAACAGAGATGGGAAGAACAGTGACAAGGCTAGTGCTGTGAGATCGAAGCATTC TGTGACTGAGCAGCGGAGGAGGAGCAAGATCAACGAAAGGTTTCAAATATTGAGAGAACTAATCCCTCAATGCGACCAGAAGAGGGATACAGCATCCTTT CTATTAGAGGTGATCGAATACGTCCGTTATTTACAAGAAAAAGTGCAGAAGTACGAGGGTCCGTATCAGGGTTGGCCTGCGGATACAACAAATCGCACCT TGGAACAGAGGAATAGTCACTGGCAAGTTCAGAATTTGGTTGGTCATCCACAAGCAATGAACAATGGTTCGGGTATGGTGCCGGTATTTCCTGCAAAGCT CAACGAGAGTGGCATTGCTGTTACCTCTTCCATGATGGAGCCCGATTCTTTAAGGGATGCAGCTATGATGCAGCAGCAAGCGGACTTACTGAATAAGGAC GGCTACCCTGATCTTCTCAGGCACTTTCAGACAGCAACCTTGCCTGCTGTTCGCAGTGATGGCGTCGATGCGCATCATCCTCTTCAGCAACCTTTGTCTG ATCCACAAACAGCCGAGTGTCCCGTGACTGACGAGGAACTAGCCATTGAAGGAGGGACGATTAATATTTCCAGTGCATACTCTGAAGGGTTACTGAATGC TCTGACGCAAGCGCTACAGACTGCAGGAGTCGATCTTTCACAAGCAAACATTTCACTGCAAATCGATCTTGGGAAACGAGCTAAGGATAATCAGAACACA CTTCCTAGCAACCAAATGCCAATTCATCCAAGAGATGGAACTGACCATGTCGATAAGCGCATGAAGATGTAG
AA sequence Show only first row Show all	>Lus10004630 pacid=23176360 polypeptide=Lus10004630 locus=Lus10004630.g ID=Lus10004630.BGIv1.0 annot-version=v1.0 MRGKGNQNHQEEEEYDEEELVVGSRKDGEGAPSSNVSATTRNSANNTYSNRDGKNSDKASAVRSKHSVTEQRRRSKINERFQILRELIPQCDQKRDTASF LLEVIEYVRYLQEKVQKYEGPYQGWPADTTNRTLEQRNSHWQVQNLVGHPQAMNNGSGMVPVFPAKLNESGIAVTSSMMEPDSLRDAAMMQQQADLLNKD GYPDLLRHFQTATLPAVRSDGVDAHHPLQQPLSDPQTAECPVTDEELAIEGGTINISSAYSEGLLNALTQALQTAGVDLSQANISLQIDLGKRAKDNQNT LPSNQMPIHPRDGTDHVDKRMKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	0	1
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	3.5	0.7751
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	3.6	0.7985
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	6.0	0.7937
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	6.3	0.7650
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	8.8	0.7628
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	9.2	0.7674
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	14.7	0.7625
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	17.5	0.7086
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	17.7	0.7626
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	19.7	0.7514

Compare expression of checked genes

Lus10004630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.