Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69020 786 / 0 Prolyl oligopeptidase family protein (.1) AT5G66960 469 / 8e-155 Prolyl oligopeptidase family protein (.1) AT1G50380 326 / 8e-101 Prolyl oligopeptidase family protein (.1) AT1G76140 112 / 3e-25 Prolyl oligopeptidase family protein (.1.2) AT1G20380 107 / 9e-24 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026683 [exp] 1373 / 0 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 499 / 2e-166 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 492 / 1e-162 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 315 / 2e-95 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 311 / 6e-95 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026659 [exp] 231 / 1e-71 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10019994 [exp] 118 / 3e-27 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 111 / 6e-25 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 107 / 7e-24 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137801 [exp] 956 / 0 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 499 / 2e-166 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 337 / 2e-104 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247300 [exp] 137 / 2e-33 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 119 / 2e-27 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 118 / 3e-27 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 117 / 7e-27 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G128700 [exp] 46 / 8e-05 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10004631 pacid=23176401 polypeptide=Lus10004631 locus=Lus10004631.g ID=Lus10004631.BGIv1.0 annot-version=v1.0 ATGGCGATCAGCCGTTCCTTCATCTTAGCTTCTAGGGTTCGAACCTCCAGCTACCGCCGCCTTCTAAGCACTCAAATCCACCACACATTCCCATTCTCCT CCATCTCCCGGGAAAACCCACCGGCGGCGAAGAAAGTCCACGCCGCCGTCACCGCACACGGCCAGACCTGGCAGGACCCGTATCAATGGATGCGGAACAC ATCCGACCCGGACTTCCTAGACTACATCCGCTGGGAGAACTCCTACGCCGACGATTTCATGGCGGAGACCAACCAGCTACGGCGGACTATCGTCCGGGAA ATGCGGAATCGACTTCCGGCGAAGGTCTCCACTCCTCCTGAACGTTGGGGAAACTGGTTGTATTACCAGTATGTACCAGAAGGGAAAGAGTATCCAGTTC TTTTCAGGAGGCTGGAAGAAGGGAGTGATGAATCTGGAATTGTGAAGAAGCTGTTCAGCTTTGTGAGTGGGGAGTTCAGAAAGGAGCAGATTGTGCTTGA TTGGAATGAAATTGCTGAACAATTTGGCTATGTTCATGTGGGTACCTGCCGAGTTTCGCCATCCCACGATTTCATTGCGTATACAGTTGACATCAATGGA AGCGAGCAGTTCTTGCTTCGGATTAAGGATTTAAGCAACGGAAATATCGTTAATAGGCCAGAAGTTGAAGGAGTCGTCAGCTTGGCTTGGGCTCTAGATG GGAGGACTTTGTTCTACACTGTATCCGATCAAAATCAGAGACCTTACAGGGTGATGTGTACAGAAGTAGGCTCAGATGGGATCAGTGACATTGGAGTTTA TACAGAGAAAGACTCAAGCTTTTGTGTGGACATAACAAGCACAAAAGATGGCAAGTTTATTACTGTTTACGTTATCGATGCAGCTCGCCCACTTGATGGC TTGGAGAGAATCTGTAATCGAGTTTCAGATGTTCAGTATTTTGTGGAGCATCATCACGGTTCGTACTATATCCTTACCAATGCTCCTTTAACTGAGACCG GCAAGGAGATGTCTGATGGGAGTTACTACCTGGTTACATGCCGGAAAGAACATGTACATTCAACCGATTCACAGCAAATCATCCTTCCAAGTGAAGATGT GAGCTTCCATGATATGGACATTTTCGATCAACATTTGGTGCTATCTGTAAGTAAAGAGGGTCTACCAACAATGTGTTCGATCGAGCTTCCCATCCAAGCT TCCTGTTCATCAAAGCAATGCGATATTGAAGATCTCAATCCCTGGTATTTCCCTGTACCTACAAACCTATGCAGCATTGCTCCCGGATCGAACCACGAGT TTTCGAGCTCAGTGTACCGTGTGATTCTTTCGTCTCCTGTGATGCCTGATGCTATTGTAGACTACGATATATCAAAACGGGCATCCTCCATCGTACACCA AGATGAAACAGATGAGGTGGAAGGATGGAAAGACCTTTCCTCTGAGTACTGCTGCGAACGAAAGCAAGTCGTTTCCCATGATGGTGTTGAGATTCCTCTA ACGATCCTGTATTCTCGAAACACCTGGAGAAAAGGCGAGTCACCTGGACTATTGCACGGTTATGGAGCCTACGGCGAAACCCTGGATATGAGCTGGAGCT CAGACCGGCTGAGCTTACTCGATCGAGGATGGGTGATTGCATTTGCTGATGTTAGGGGAGGTGGAGGAGGGAATGATTCATCGTGGCATAAATCAGGCAT CAAACTAGCCAAACCAAACTCGATTCATGATTTCGTGTCATGTGCGAGCTTTCTTGTAGACGAAGGGTATGTGCACAGCAAGAAACTTGCTGCCCAAGGT ACAAGTGCAGGAGGACTCCTTGTTGCAGCAGCAATCAATATGAAGACTGATATTTTTCGTGCCGCGATCTTGAAGGTTCCATTTCTGGATATCTGTAACT CACTGCTGGATCCGAGTTTGCCTCTAACCATACTCGACTACGAAGAGTTCGGGAACCCACGGATCAAGTCGGAGTTCGACTGCATCCGAAGCTATTCGCC TTACGATAACATCCGGCGTGGGACATGCCAGCCAGCAATGCTCATAGCATCGTCATACAACGACTCGAGGGTTGGAGTGTGGGAAGCGGCCAAGTGGGTA GCCCGATTGCGAGACGTTACGTGCCCTAGCTGCTCGAGATCCATTGTGCTGAAGACGAACATGAACGGCGGCCATTTCGGAGAAGGTGGTGTCTACTCTG AGTGTGAAGAGACTGCTTATGAATATGCTTTCCTTATGAAAGCTATAGGTCCTTGTGAAGTGGACGATTGA
AA sequence Show only first row Show all	>Lus10004631 pacid=23176401 polypeptide=Lus10004631 locus=Lus10004631.g ID=Lus10004631.BGIv1.0 annot-version=v1.0 MAISRSFILASRVRTSSYRRLLSTQIHHTFPFSSISRENPPAAKKVHAAVTAHGQTWQDPYQWMRNTSDPDFLDYIRWENSYADDFMAETNQLRRTIVRE MRNRLPAKVSTPPERWGNWLYYQYVPEGKEYPVLFRRLEEGSDESGIVKKLFSFVSGEFRKEQIVLDWNEIAEQFGYVHVGTCRVSPSHDFIAYTVDING SEQFLLRIKDLSNGNIVNRPEVEGVVSLAWALDGRTLFYTVSDQNQRPYRVMCTEVGSDGISDIGVYTEKDSSFCVDITSTKDGKFITVYVIDAARPLDG LERICNRVSDVQYFVEHHHGSYYILTNAPLTETGKEMSDGSYYLVTCRKEHVHSTDSQQIILPSEDVSFHDMDIFDQHLVLSVSKEGLPTMCSIELPIQA SCSSKQCDIEDLNPWYFPVPTNLCSIAPGSNHEFSSSVYRVILSSPVMPDAIVDYDISKRASSIVHQDETDEVEGWKDLSSEYCCERKQVVSHDGVEIPL TILYSRNTWRKGESPGLLHGYGAYGETLDMSWSSDRLSLLDRGWVIAFADVRGGGGGNDSSWHKSGIKLAKPNSIHDFVSCASFLVDEGYVHSKKLAAQG TSAGGLLVAAAINMKTDIFRAAILKVPFLDICNSLLDPSLPLTILDYEEFGNPRIKSEFDCIRSYSPYDNIRRGTCQPAMLIASSYNDSRVGVWEAAKWV ARLRDVTCPSCSRSIVLKTNMNGGHFGEGGVYSECEETAYEYAFLMKAIGPCEVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69020			Prolyl oligopeptidase family p...		Lus10004631 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	7.2	0.8062
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	7.7	0.8375
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	8.4	0.8163
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	8.8	0.8676
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	9.5	0.8477
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	10.7	0.8486
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	19.0	0.8225
AT2G40770			zinc ion binding;DNA binding;h...		Lus10030511 [exp]	22.6	0.7508
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	26.1	0.8343
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	26.2	0.8175

Compare expression of checked genes

Lus10004631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.