Plant FIBer expression Database

Lus10004632 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 59 / 1e-09 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT1G13650 45 / 3e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026682
[exp]
627 / 0 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10036829
[exp]
144 / 3e-39 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10019193
[exp]
131 / 5e-35 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111800
[exp]
108 / 3e-26 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.010G138100
[exp]
105 / 5e-25 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10004632 pacid=23176390 polypeptide=Lus10004632 locus=Lus10004632.g ID=Lus10004632.BGIv1.0 annot-version=v1.0
ATGCCTGAAGTGACAATCTGTTACGAGGAGGACGAAATTAGCCACGCGGTGAAGGACATCTGTGTGGACGAGGGAGTGCCTGTGCACGACAAGTTCTTGT
TCGACACGAGTACTATGGATGACTACCTCTCCACATTCTTGCCTCCTGGAAAGGTTATCAAAGGCCAGGAATTGGATAAAGAGCCTGTTATTGTGGATGA
TGTCATTCCTGAAAACCCTGCTGTATCGAAGATTTCGAAAGATAAGGGATCAGAAGATGCTGAGAAGATTCACTCTGTGGAAATCAAGGAGGAAAAGGTT
GAACCTCTGGAGATTCGTTCTGTGGAAATCAAGGAAGAAGAGGTTGATGAATCTTCAGCGAATTTGGCAAGTAATGCACTGAAAAGGAGCAAATCACTTG
GAGATTTGCTGGCTTTACCGGAACCAAGCACGGATTCTACCTGTCTCGAACCGTTCAGCAGTCAAACAAGTGGCAGCATTCGTCGACATGGGCCAGATGA
CAATCCAGACTTATCAGAAGCTACCTCAACTAGTCACGAAGAACTCGAAAATGACAACAAGGGACCAAGCTCGTCAATGAACTCTATCGCTTCTACATCA
AAGGAACCATCCAATTCCGCTGCCACAACAGTCCATGAGAGTGATCAGGAAGCTGAAAGACACAGTATGGATTCCATGTCTGATGACTTGACCAACGAAG
TTGCTGGCCGATTATCCTTCGAAAATCGAGTCAGCAATGCAGCAGAGATCAGGCTCCCTGACCCAGACCATGTCAAACCTCAACTGCTCACTTCCAGCAT
TGCAGGAACCGACTCGAACCGGATTCGATACAACATTGGCGACTCCTCCCGCTCCTCGGTCGTGGCAGCAACCGAACCGATACCTTACTCCGGAAGCATA
TCGATGCGGTCAGATAGCAGCACCACGAGTGCTCGCTCCTTCGCTTTCCCAGTTTTGCAATCTGAATGGAACAGCAGCCCGGTGAGGATGGCAAAAGCTG
ACCGGAGACGGTTGAGGCACAGGCGCTGGAGGAGTGGTATTCTCTGCTGTAAATTCTGA
AA sequence
>Lus10004632 pacid=23176390 polypeptide=Lus10004632 locus=Lus10004632.g ID=Lus10004632.BGIv1.0 annot-version=v1.0
MPEVTICYEEDEISHAVKDICVDEGVPVHDKFLFDTSTMDDYLSTFLPPGKVIKGQELDKEPVIVDDVIPENPAVSKISKDKGSEDAEKIHSVEIKEEKV
EPLEIRSVEIKEEEVDESSANLASNALKRSKSLGDLLALPEPSTDSTCLEPFSSQTSGSIRRHGPDDNPDLSEATSTSHEELENDNKGPSSSMNSIASTS
KEPSNSAATTVHESDQEAERHSMDSMSDDLTNEVAGRLSFENRVSNAAEIRLPDPDHVKPQLLTSSIAGTDSNRIRYNIGDSSRSSVVAATEPIPYSGSI
SMRSDSSTTSARSFAFPVLQSEWNSSPVRMAKADRRRLRHRRWRSGILCCKF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G03810 18S pre-ribosomal assembly pro... Lus10004632
[exp]
0 1
AT2G03810 18S pre-ribosomal assembly pro... Lus10026682
[exp]
6.2 0.8467
AT1G69020 Prolyl oligopeptidase family p... Lus10032378
[exp]
6.6 0.8088
AT2G32580 Protein of unknown function (D... Lus10035349
[exp]
7.5 0.8145
AT5G03040 IQD2 IQ-domain 2 (.1.2.3) Lus10015068
[exp]
13.2 0.8092
AT3G15030 TCP TCP4, MEE35 maternal effect embryo arrest ... Lus10000463
[exp]
15.2 0.7742
AT1G53230 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea... Lus10002195
[exp]
19.6 0.7595
AT4G35780 STY17 serine/threonine/tyrosine kina... Lus10025010
[exp]
20.5 0.7357
AT5G65820 Pentatricopeptide repeat (PPR)... Lus10011566
[exp]
23.0 0.8002
AT2G40020 Nucleolar histone methyltransf... Lus10040211
[exp]
24.0 0.7461
AT4G36050 endonuclease/exonuclease/phosp... Lus10041907
[exp]
26.3 0.6874

Lus10004632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.