Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 375 / 4e-125 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14640 358 / 2e-118 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 349 / 6e-115 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 349 / 6e-115 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14620 346 / 8e-114 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14630 345 / 2e-113 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 344 / 5e-113 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT1G75130 343 / 1e-112 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14650 340 / 1e-111 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14680 340 / 1e-111 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026681 [exp] 851 / 0 AT3G14620 322 / 4e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036822 [exp] 756 / 0 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 550 / 0 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 523 / 1e-176 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 499 / 2e-173 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10026085 [exp] 493 / 3e-171 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 490 / 2e-168 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10026084 [exp] 476 / 1e-164 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 456 / 8e-157 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 621 / 0 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 582 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 572 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 569 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 555 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 554 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 380 / 5e-127 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 375 / 8e-126 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 377 / 1e-125 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.018G070900 [exp] 375 / 5e-125 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004633 pacid=23176368 polypeptide=Lus10004633 locus=Lus10004633.g ID=Lus10004633.BGIv1.0 annot-version=v1.0 ATGGAAGATCTCACAGTCCTCCTTCTCTTTACTCTGCCATGGCTTCTCCTCTTTCTAAACAACCTTGTCAAGTTCTTGAACCAAGTATGGCTGAGGCCAA TCCTGATCCAATCAGGAATGAGCTCCCAAGGAATCAAAGGACCCCCTTACAGATTCCTGCATGGAAACACCAGAGAGATCAATGACATGAGAAGTGAAGC TGTCAACTCTCCCATGGAGCTCTCTCACCAGATGCTCCCCAGACTCATGCCTCATGTCCATCTTTGGACCAGGATTTATGGGATGAACTTCCTCAACTGG TATGGAACAAAGCCACAGCTAGTAATCACAGATCCAGAGCTAGTGAAAGAGGTTCTAAGCAACAAAGAAGGAACCTTTCCCAAGAAGTTCATCCAAAGCT ATGCATATAAGTTCTTAGGAAATGGTCTCTTTGCTTCACAAGGGGAGAAATGGACCAAGATGAGGAAGCTTGCCAACCAAGCCTTCCATGGAGACTGCCT CAAGGCGATGATACCCGCAATGGTTGCAAGTGTCGAGACAATGCTCGCTAAATGGGAAGAAGAGGCATCGATCGAGATTGATGCCTTCAAGGAGTTCAGG ATCCTGACATCGGAGGTGATCTCAAGGACAGCTTTTGGAAGCAGCTACAAAGAGGGCAAGAATGTGTTTGACATGTTGATGCAGCTTGGCAGCATTGTGC ACAGGAACAACTTCAAAGCCGGGATCCCGTCGTTCGGGATCTTCAAGCTCTGGAGAAGCGTGGACGATGTCGAGTCTGACAGGCTTCAGGTAGCCATTAG AGAAGGGATCATAGAGGTGATAAGAAAAAGGACAAAAGGGTCATTTCATGGAAGTGGTGACTTCCTTGGGTCTCTCTTGAATGCATACCATGAAGAGAGT GATAGTCCAAGGAAGATCAGTGTTGATGATTTGGTTGATGAGTGCAAGTCATTCTATGTTGGTGGACATGAAACAATCACCAACTCGCTAACGTGGACGG TTTTCCTTCTTGCAATCCACACAGAGTGGCAAGACAAGGCTAGAGAAGAAGTGGTGGAGTTGTTTGACCAAAGGAATCCTTGCCTTGATGGTCTTGCTAG GATGAAGACTATGACAATGATCATCAACGAATCCCTAAGACTCTACCCACCAGCTCTAAACCTCACAAGAGAAGTTGAGAAAGAGACCAAGTTGGGGAAG TTCACACTCCCGGCAAAGATGGCACTCAGCCTACCAATTATAGCAATTCACCAGAACCCATTACTGTGGGGGGAAGACTGCCATCTATTCAAACCCATTA GGTTTGCAGATGGTGCAGCCAGAGCTGCAGTGTTCCTGCCGTTCGGGTTTGGACCGAGGACCTGTGTCGGATCGAGCTTCGCAACAGCCGAGATCAAGAT TGCTCTGTCCATGATCCTGCAGAGATTCAGATGGTCAATCTCCCCTTCTTATGTCCACTCACCTTTCCACATGCTCACTATCTGCCCCAAACATGGCCTC CAAATTGTTCTCCAGCCGGTCTAG
AA sequence Show only first row Show all	>Lus10004633 pacid=23176368 polypeptide=Lus10004633 locus=Lus10004633.g ID=Lus10004633.BGIv1.0 annot-version=v1.0 MEDLTVLLLFTLPWLLLFLNNLVKFLNQVWLRPILIQSGMSSQGIKGPPYRFLHGNTREINDMRSEAVNSPMELSHQMLPRLMPHVHLWTRIYGMNFLNW YGTKPQLVITDPELVKEVLSNKEGTFPKKFIQSYAYKFLGNGLFASQGEKWTKMRKLANQAFHGDCLKAMIPAMVASVETMLAKWEEEASIEIDAFKEFR ILTSEVISRTAFGSSYKEGKNVFDMLMQLGSIVHRNNFKAGIPSFGIFKLWRSVDDVESDRLQVAIREGIIEVIRKRTKGSFHGSGDFLGSLLNAYHEES DSPRKISVDDLVDECKSFYVGGHETITNSLTWTVFLLAIHTEWQDKAREEVVELFDQRNPCLDGLARMKTMTMIINESLRLYPPALNLTREVEKETKLGK FTLPAKMALSLPIIAIHQNPLLWGEDCHLFKPIRFADGAARAAVFLPFGFGPRTCVGSSFATAEIKIALSMILQRFRWSISPSYVHSPFHMLTICPKHGL QIVLQPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	0	1
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	3.2	0.9403
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	4.9	0.9276
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	5.0	0.9185
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	5.5	0.9250
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	6.0	0.9205
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	7.7	0.9067
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	8.1	0.9084
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	8.5	0.8679
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	9.2	0.9177
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	9.8	0.8272

Compare expression of checked genes

Lus10004633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.