Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69120 318 / 5e-111 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 280 / 6e-96 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 253 / 7e-86 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G30260 194 / 3e-62 MADS AGL79 AGAMOUS-like 79 (.1) AT1G24260 180 / 9e-57 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 170 / 7e-53 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 168 / 2e-52 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT3G61120 162 / 8e-50 MADS AGL13 AGAMOUS-like 13 (.1) AT2G45650 162 / 9e-50 MADS AGL6 AGAMOUS-like 6 (.1) AT2G03710 154 / 2e-47 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026679 [exp] 403 / 5e-145 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 270 / 4e-92 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 269 / 1e-91 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 262 / 5e-90 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034662 [exp] 257 / 2e-87 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034370 [exp] 217 / 1e-71 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 217 / 9e-71 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 177 / 1e-55 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 174 / 9e-55 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G098500 [exp] 311 / 1e-108 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.010G154100 [exp] 300 / 4e-104 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.012G062300 [exp] 269 / 6e-92 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 246 / 8e-83 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 239 / 6e-80 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098400 [exp] 186 / 2e-59 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G169600 [exp] 171 / 1e-53 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.017G099700 [exp] 170 / 5e-53 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 169 / 8e-53 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.004G115500 [exp] 169 / 1e-52 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10004637 pacid=23176399 polypeptide=Lus10004637 locus=Lus10004637.g ID=Lus10004637.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGGAGAGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTTACTTTCTCGAAAAGGAGAGCTGGATTGCACAAGAAAGCTCATG AGATCTCTGTCCTTTGTGATGCTGAGGTTGCCCTTATTGTCTTCTCCCACAAGGGGAAGCTCTTCGAATACGCCACCGACTCCTGCATGGAGAAGATCCT GGAGAGGTATGAGAGGTATTCATATGCTGAGAGGCAACTTGTTGCTACCGAGCTCGACTCGCAGGGTAACTGGCTTATGGAGTACAACAGGCTGAAGGCA AAGATTGAACTCCTGCTAAGGAACCACAGGCACTATATGGGAGAGGATCTGGACAGCATGAGCACTAAGGAGCTGCAGAACTTGGAGCAGCAGCTTGATT CAGCTCTCAAGAACATCCGAACCCGAAGGAACCAGCTAATGCATGAGTCAATCACAGCCCTTCAGAGAAAGGAGAAAGCAATCCAAGAGCAAAATGATGT TCTAGCCAAGCAGGAAGAACACCATCATCAGGGACATGATGCCAGGGGTAGAAATGACCTTGACCTCACCTTGGAACCCATTTACTCCTGCAACCTTGGC TGCTTTGCTGCCTGA
AA sequence Show only first row Show all	>Lus10004637 pacid=23176399 polypeptide=Lus10004637 locus=Lus10004637.g ID=Lus10004637.BGIv1.0 annot-version=v1.0 MGRGRVQLKRIENKINRQVTFSKRRAGLHKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERQLVATELDSQGNWLMEYNRLKA KIELLLRNHRHYMGEDLDSMSTKELQNLEQQLDSALKNIRTRRNQLMHESITALQRKEKAIQEQNDVLAKQEEHHHQGHDARGRNDLDLTLEPIYSCNLG CFAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	5.5	0.9989
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	6.8	0.9735
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	7.9	0.9988
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	9.6	0.9986
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	11.1	0.9985
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	12.2	0.9912
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	12.4	0.9984
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10042749 [exp]	12.9	0.8496
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	13.6	0.9984
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017870 [exp]	14.1	0.9597

Compare expression of checked genes

Lus10004637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.