Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69160 64 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026677 [exp] 365 / 4e-126 AT1G69160 62 / 9e-11 unknown protein Lus10000805 [exp] 89 / 1e-21 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10036813 [exp] 91 / 3e-20 AT1G69160 80 / 4e-17 unknown protein Lus10019172 [exp] 84 / 5e-18 AT1G69160 94 / 6e-22 unknown protein Lus10026940 [exp] 71 / 5e-13 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1) Lus10027494 [exp] 64 / 7e-13 ND 34 / 0.006 Lus10005297 [exp] 61 / 1e-11 ND 40 / 5e-05 Lus10037909 [exp] 57 / 3e-09 ND 38 / 0.002 Lus10034068 [exp] 57 / 1e-08 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154200 [exp] 71 / 1e-13 AT1G69160 114 / 2e-29 unknown protein Potri.008G098200 [exp] 68 / 2e-12 AT1G69160 134 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004639 pacid=23176402 polypeptide=Lus10004639 locus=Lus10004639.g ID=Lus10004639.BGIv1.0 annot-version=v1.0 ATGTCTGCAACAGGGCTCTCACCGCAATCATCATCATCATCAAAGCTCTTCAACAACAAACCATTCCACCACAGGAACAGCTCGGCGGAGCTCGATGTGT TCGAGGCAGCCAACTACTTTTCGGGCTACTACAACGAGGTCCCGTCCCACTACACAATCACAAACAACAATAAAGTCATAGCCAGGGGAGCACCGGCCGG TAGAAGGATGAGCTTGGACAGTGGGATGATCCACACCCACCAAATCATCATCAAGGACAGCAACATTAACAATGTTGGTAGTAGTACTAATGTCAAGCAG CATAAGCAGCCGAGCTCGCCAGGAGCCAGGCTGGCGAGCTTTCTGAACCAGCTGTTCCACCAGAGTGGAACAGCTGGTTCGGGTTTGAAGAAGAATAAGA CGAAGAAGTCGAAATCTTCGGCGAAGGATGAGGATCATGATATCAATGCTAATGGTGGAGGGAGGAGGAAGAGGAGGAATAGTATTAGTAACATTACAAG GTCATGGTACTATAGTACTAGTACTGGTACCAGTACAGGTACTAGTACTTGTACATCATCTTCATCAGCTCATCTCCCTCCTCAACCAGCTGCTAATTAC AGTCTTCCAACTAAATCAAACAAAGGTTTCAATCAGAAGGCAGTTTCTCCATTGCCAATTAAGAGTAATGGTGGGTTGGTGGATGAGAAGGTGGCTAATT ATAAGGGTGCTAGGAGTTTGGACAATGGTTGTGGCCATGGTGATGGATATGAGAGTGATTCAAGCTCCGATCTTTTCGAGTTGCAGAACTACGACTCTGA TGTCTATTCAAATGGTGGACTTCCCGTCTATGACACTACAGATGTTTCGGCGCTCGAGCGGGTAAAGAGCATGGGTTATGAGCAATGTATCTTCGAGACG GACAGGCAAGTGGTGGCCGCAGCGATTACGAGTTTGGAGCCGGATGTCATGGAATTTGGAGTATCTATTGCAGCGTGCCATCAAATCATTATGGACAAAC CAAACTTCACGGTGTCTTGGGTTAGGAGATCTATGAAGGGGGTTGCGTACGAGCTAACTCGTCGCTCCCACATCCTCACGTCCCCCGTTATGGGTATATT CGTTAACCGGCTAACCAAACCGAATACAAGTAGTAATGGTTAG
AA sequence Show only first row Show all	>Lus10004639 pacid=23176402 polypeptide=Lus10004639 locus=Lus10004639.g ID=Lus10004639.BGIv1.0 annot-version=v1.0 MSATGLSPQSSSSSKLFNNKPFHHRNSSAELDVFEAANYFSGYYNEVPSHYTITNNNKVIARGAPAGRRMSLDSGMIHTHQIIIKDSNINNVGSSTNVKQ HKQPSSPGARLASFLNQLFHQSGTAGSGLKKNKTKKSKSSAKDEDHDINANGGGRRKRRNSISNITRSWYYSTSTGTSTGTSTCTSSSSAHLPPQPAANY SLPTKSNKGFNQKAVSPLPIKSNGGLVDEKVANYKGARSLDNGCGHGDGYESDSSSDLFELQNYDSDVYSNGGLPVYDTTDVSALERVKSMGYEQCIFET DRQVVAAAITSLEPDVMEFGVSIAACHQIIMDKPNFTVSWVRRSMKGVAYELTRRSHILTSPVMGIFVNRLTKPNTSSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69160			unknown protein		Lus10004639 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	6.9	0.7568
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	12.1	0.7454
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	12.8	0.7345
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	14.1	0.7305
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	22.5	0.7306
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	26.2	0.7217
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	27.8	0.6656
					Lus10008292 [exp]	30.9	0.7066
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	33.3	0.7314
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	33.5	0.6649

Compare expression of checked genes

Lus10004639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.