Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03667 647 / 0 Asparagine synthase family protein (.1) AT3G47340 53 / 5e-07 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G65010 46 / 6e-05 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 46 / 8e-05 ASN3 asparagine synthetase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026669 [exp] 1042 / 0 AT2G03667 696 / 0.0 Asparagine synthase family protein (.1) Lus10042281 [exp] 50 / 6e-06 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 48 / 2e-05 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 45 / 0.0003 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10031870 [exp] 43 / 0.001 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157700 [exp] 772 / 0 AT2G03667 708 / 0.0 Asparagine synthase family protein (.1) Potri.009G072900 [exp] 50 / 4e-06 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 49 / 9e-06 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10004643 pacid=23176373 polypeptide=Lus10004643 locus=Lus10004643.g ID=Lus10004643.BGIv1.0 annot-version=v1.0 ATGTGCGGAATCGCCTTGATCGTCGCCGGCGTTCGTATGGACTTCTCATCTCTAACTCCCGATACTCCGCCGTCACTACCTCCAGCTCAGCTCAAATCTG CTTCGAGTTTCTCCGTCAACGAGCTCAAATCAGCTCTCCGCCGACGAGGCCCCGACAGCTTGGCAAGCAAGAAGGTCAAGCTCGTCGGAGGATTAGCTCA TCTATCAGCAGGAGGAGATGAGCTGGTTGTTGAAGAAGAAGAAGACGATTGCTCTTCCGGTGGGGAGCTTTACTTCATTGGAGCTACGTTGCAGTTGAGG GGAACGCGTCGAGTGATGCAACCATTCGTGGATTGCTCAAGGAACGTCCTTGTCTTCAACGGTGAGGTCTTTGGAGGAGTTGGAGTCGGTAGAGATGATA ACGATAGCGAAGTTCTTATGCAGACTCTGGAGAATTGCTGCTCCAGTAGTGGGGAAGGGAAAAGTTCTGTACTTGAAGTGCTTTCACTAATCAAAGGGCC TTGGGCTATCATCTATTGGCAGGAAAGTTCAAGGACTTTATGGTTTGGCCGAGATGCATTCGGCAGGAGGAGCCTTCTTGTTCACTGGCCAAACGAGATG GATTCTCGGTTTTTGCTTTCGTCTGTGTCACCAATGTCTTCTGCTGATCAGAGTTCTGATGTTGATGTGAAAGATGGCTCCTCGCCGGATTTTTGGGAGG AGCTCTCCTGTGGAATCTATAGTTGTTCCTTAGATTACAGTTCGCTAGATGGGTGTATAGTTGGCAGTGTTCAAAGACATGAGTGGGCTAACAATGGACT ACTGGAGCTCATCAGATGGGAGAGGGCTTCGGTCATTCCACAACCTGCTTGCTTCTTCCTGTCAGTACCTGTCCAAACTTCTGTATCAAGGCAGGCTCAC AACGTGTTAGAAGCATTGAGGAAGTCTGTAATGTTAAGAACTTCAGAAAATTCCATATTTCAGGAGATGGCAGATGATAGTAATCAAGAAGAATGCGCTC CCATTGCTGTTCTTTTTTCTGGTGGCTTGGATTCTATGATATTAGCTGCATTTCTGCACCAGTCCCTCGATCCGAATTATGGTATTGATTTGCTAAACGT AAGCTTCGATGGCCAGTCCGCTCCTGATAGAATCACTGCCAAGGCAGGCGCAGAGGAACTGGAAAAGATTGCCCCTTCAAGAAGGTGGAAACTTGTTGAG ATTGATGCTGACTTGTCCAAGTTAACGATGGAGATGAAGCATGTCAAGGAGTTAATTCACCCTGCAAACACTTACATGGATCTGAATATAGGGACTGCTT TATGGCTGGCTGCCAATGGGGACGGTTGTTGCAAAGTCGAGAATCGACAGCGTGTGCAATACAAGTCCCGGGCTAGGATAGTTCTTGTTGGTTCAGGAGC CGACGAGCAATGTGCTGGATATGGAAGACACAGAACAAAATACAGATGTGGAAGTTGGCTTGGCCTTCATGAAGAGATGAAACTGGACATGCAAAGGATA TGGAAACGAAACATGGGGAGGGACGATCGATGTATTGCAGACAATGGAAAGGAGGCTAGGTTCCCGTTCCTGGACGAAGATGTCATCAAAACTCTCCTCG AGATCCCGTTATGGGATGTTGCGAACCTTGATGAACCAAGTGGAGTTGGGGATAAGAAGATCTTGAGAGAGGTTGCACGATTGCTTGGCTTGCAAGAAGC ATCTGTCCTCCCTAAGAGAGCAATCCAGTTTGGGTCGAGGATTGCTCGAGAATCGAATCGGAAGAATTTCGGAAGCAACCGTGCTGCTAACCAGGCATCT GCTGGAAGTGTAGTGATTAACCATGAAGTTTGA
AA sequence Show only first row Show all	>Lus10004643 pacid=23176373 polypeptide=Lus10004643 locus=Lus10004643.g ID=Lus10004643.BGIv1.0 annot-version=v1.0 MCGIALIVAGVRMDFSSLTPDTPPSLPPAQLKSASSFSVNELKSALRRRGPDSLASKKVKLVGGLAHLSAGGDELVVEEEEDDCSSGGELYFIGATLQLR GTRRVMQPFVDCSRNVLVFNGEVFGGVGVGRDDNDSEVLMQTLENCCSSSGEGKSSVLEVLSLIKGPWAIIYWQESSRTLWFGRDAFGRRSLLVHWPNEM DSRFLLSSVSPMSSADQSSDVDVKDGSSPDFWEELSCGIYSCSLDYSSLDGCIVGSVQRHEWANNGLLELIRWERASVIPQPACFFLSVPVQTSVSRQAH NVLEALRKSVMLRTSENSIFQEMADDSNQEECAPIAVLFSGGLDSMILAAFLHQSLDPNYGIDLLNVSFDGQSAPDRITAKAGAEELEKIAPSRRWKLVE IDADLSKLTMEMKHVKELIHPANTYMDLNIGTALWLAANGDGCCKVENRQRVQYKSRARIVLVGSGADEQCAGYGRHRTKYRCGSWLGLHEEMKLDMQRI WKRNMGRDDRCIADNGKEARFPFLDEDVIKTLLEIPLWDVANLDEPSGVGDKKILREVARLLGLQEASVLPKRAIQFGSRIARESNRKNFGSNRAANQAS AGSVVINHEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	0	1
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	3.0	0.8482
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	3.9	0.8295
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	5.3	0.7977
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	7.7	0.8180
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10034164 [exp]	12.6	0.8229
AT1G73020			unknown protein		Lus10009732 [exp]	12.9	0.8319
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	15.8	0.8071
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	21.2	0.7805
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	22.3	0.8105
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	28.5	0.7588

Compare expression of checked genes

Lus10004643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.