Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 194 / 2e-59 AFP2 ABI five binding protein 2 (.1) AT1G69260 184 / 8e-56 AFP1 ABI five binding protein (.1) AT3G29575 127 / 7e-35 AFP3 ABI five binding protein 3 (.1.3.4) AT3G02140 100 / 7e-24 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT3G07250 91 / 4e-20 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT4G28910 72 / 9e-14 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026667 [exp] 432 / 1e-152 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10037084 [exp] 187 / 1e-57 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10036898 [exp] 184 / 2e-56 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10022764 [exp] 102 / 1e-24 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10003145 [exp] 100 / 4e-24 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 64 / 5e-11 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 62 / 1e-10 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096500 [exp] 263 / 3e-86 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.010G157900 [exp] 258 / 2e-84 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 118 / 2e-30 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 114 / 4e-29 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 70 / 5e-13 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 66 / 6e-12 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10004645 pacid=23176379 polypeptide=Lus10004645 locus=Lus10004645.g ID=Lus10004645.BGIv1.0 annot-version=v1.0 ATGGAGAGCTTGTCACTGGAGATCAACAGGTACCCACGGGATCTGTTGACGAGATTCATCTCCTCAGCGGCGGGGGAGAAGCGGAGAGCTAGAACTAGGG AGGAAGAGGAAGAGGAAGAAGAAAGGGAAGCTGACGAAATTGAGCTGAATTTAGGGCTGTCACTCGGCGGCAGATTCGGGGTTGATAAGACGAAGCTGGC TCGATCGTCGTCGATCGCCGGGCCGATACCGGAGGCTTTTTTCAAGGAGAGTGACTCAGCATTCGGTGGCGGCGTGGGGTCGGATTCGTATCATCATCAT CATCATCATCCTAATCAGCAGCTTATGAGGACTTCTTCTTTGCCGACGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAAATGCAGACTTTGAGGAGGA TGGAGGCCAAACGGCGCCGTAGCGAGAAGCAGAGGAACTCTGATGAGAAGTTGAGTAGAGGTGGGAGTTGGGTTGTTAGTAGGCCGCAAGGGAGCTTGAA TAGCTGCAGAAGCAGGGAAGGATCGCAGGGCTCTATTGAGTCTTCTCATGGCGGTGGGAGTTCATCTGGGGCTGCTCCTGCTCCTGTTCAAGGATCAGGC AACGGTGGCGAATCAAGAAGCCCTGGTCTTAACCAATCCTCGTCGCAAGACCAATGCAACCATCCCCCTGGACCCTCCTCTTCAGCCTCAAAGATCACCA CAACCGAAAAGCCCGAGAACAACAAGAGAGCGAGGGAGATCGGGACGAGCGCCATGGAAGACATGCCATGCGTGTTCACGATAGGCGATGGCCCCAACGG GAGACGAGTAGAAGGCATCCTGTATAAATACGGCCGCGGAGAGGAAGTGAGGATAATGTGTGTATGCCACGGAAGCTTCCTTTCGCCTGCCGAATTCGTC AAGCACGCCGGTGGCAGCAATGTCAATCACCCTCTTAAGCATATAGTTGTTAACCCTGCAGGCCCTTCCTTTCTGTGA
AA sequence Show only first row Show all	>Lus10004645 pacid=23176379 polypeptide=Lus10004645 locus=Lus10004645.g ID=Lus10004645.BGIv1.0 annot-version=v1.0 MESLSLEINRYPRDLLTRFISSAAGEKRRARTREEEEEEEEREADEIELNLGLSLGGRFGVDKTKLARSSSIAGPIPEAFFKESDSAFGGGVGSDSYHHH HHHPNQQLMRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRSEKQRNSDEKLSRGGSWVVSRPQGSLNSCRSREGSQGSIESSHGGGSSSGAAPAPVQGSG NGGESRSPGLNQSSSQDQCNHPPGPSSSASKITTTEKPENNKRAREIGTSAMEDMPCVFTIGDGPNGRRVEGILYKYGRGEEVRIMCVCHGSFLSPAEFV KHAGGSNVNHPLKHIVVNPAGPSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10004645 [exp]	0	1
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002900 [exp]	4.4	0.7883
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	8.7	0.8128
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	9.0	0.8049
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	9.8	0.8149
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	12.9	0.8242
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	18.0	0.7668
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	23.7	0.7964
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10018285 [exp]	23.9	0.8022
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	26.5	0.8125
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	26.9	0.8081

Compare expression of checked genes

Lus10004645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.