Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 539 / 8e-179 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 483 / 7e-165 RPK1 receptor-like protein kinase 1 (.1) AT5G07280 286 / 1e-83 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G31420 257 / 4e-77 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 253 / 2e-75 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 240 / 3e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 236 / 4e-69 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 234 / 4e-68 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G17230 241 / 6e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT2G13790 233 / 1e-67 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026666 [exp] 1110 / 0 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 676 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 651 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 496 / 8e-163 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 496 / 1e-162 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 412 / 4e-135 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007292 [exp] 246 / 1e-72 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020962 [exp] 236 / 6e-69 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10028612 [exp] 239 / 2e-67 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096400 [exp] 572 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 546 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 543 / 2e-180 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 434 / 2e-139 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.001G129000 [exp] 249 / 6e-74 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 244 / 4e-72 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G108000 [exp] 241 / 1e-70 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.003G023000 [exp] 240 / 2e-70 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.004G059100 [exp] 239 / 5e-70 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 236 / 6e-69 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004646 pacid=23176363 polypeptide=Lus10004646 locus=Lus10004646.g ID=Lus10004646.BGIv1.0 annot-version=v1.0 ATGAAACTGCGAAAGCTGGTAAATGAACCCTTCTTGTTATTCCTCCTAGTTCTCTGTTTCTCCTTCCTTTACACAGCTTCATCCTCGCCGGAGAAGTCAG CTCTTCTACACTTCAAGTCAACAGTCGCCGATCTTGACGGAGTCCTCTCCGCCTGGAACTCAACCCACCACTGTTCATTTCCAGGTGTCACCTGCAACTC CATGGCACAAGTCATCTCCTTGAGACTCTCCGGTTCGAACCAGAACGGTAAGCTGGGAGGAAAGCTCTCGCCTTTACTCGGAAAACTCAGCAAGCTTAAG GTTTTATCTCTGCCTTTTCATGAACTCAGAGGAGAAATTCCCATGGAGATTTGGGGGTTACAGGATCTGGAAGTGCTAAATCTTGAAGGGAATTTGATTT CATCAATGGGATTTGAATTCCCCACTACTTCTGGTGAGTTGAGGACAAAGTTGAGGGTTTTGAATCTGGGGTTCAACCGGATTTGGGGACCGATTCCCGG TTCGATTTCGAGGTTCAACCGCTTGGAGGTGTTGAATTTAGCTGGTAATCAGCTGAATGAGACAGTTCCGACCAGTTTAGCTAACTGTCGTCAGCTGAAG ATGATCTCGTTGAGCTCGAACAGGTTAACCGGCCGAATCCCCAGCGAATTCGGCCAGTTGAGGCAGCTTCGGGTTCTCGATTTAAGCGATAACAAGCTCA CCGGACCGTTTCTGGGAAGCTTGTCTCGAAAATGTAGCGAGATGCACTGTGTGATCGTTAATGTTGGGAGTCGAGTTTCGAGTTTAGCTGTTACTTCTGG CTCAAGCAATGTGAGAAGAACCCTATCTGCAGCTGATCAAGTGTCCTTACGATACGCATCTCCGGAGAATCGGACCGAAGTCCATGTCGAGGGTTCAAGT ACTAGAGCTGGAAACGACGGGATGAGACCAATCGAGATAGCATCGGTGGCGTCCGCATCGGCCATCGTCTCGGTCCTCATACTATTAGTGATCATGTTCT TCTACTTGAGAAAACGGGCACCGAATGCTCGGGTGGTCCAGGTCTCGGAACCGAAGGAGATCATCGAATTCGTCGACATCGGAGTTCCCTTGCTCTACGA AGAAATCGTGCTAGCAACAGAGAACTTCAGCATGCGGAACTGCATCGGAAACGGAGGCTTCGGCACCACTTACAAGGCCGAGATCGCTCCGGAAATTCTC GTCGCGATCAAGAGGCTCGCTATCGGAAGGTTCAACCAAGGCGTCCGGCAATTCCATGCCGAGATCAAGGCTCTAGGAACGATGAAGCACCCGAATCTGG TAACGTTACTCGGTTTCCACGCTAGCGAATCCGAAATGTTCTTGATATACAACTACTTACCCGGAGGCAATCTCGAGTCCTTCATTCGAGAAAGATCTGC ATCAACTTTTCAATGGAAGACACTCCACAAGATCGCAATGGACATCGCTCGAGCACTAACATACTGCCACGATCAGCGAATCCTCCATCGCGATGTCAAG CCGAGTAACATCCTCCTCGACGATTCCCACAACGCGTACCTCTCCGATTTCGGGCTCGCCAGGCTACTCGGGACTTCAGAGACCCACGCTACGACCGGCG TGGCAGGGACTTTCGGCTACGTGGCTCCCGAATACGCGATGACATGTCGTGTATCAGAGAAGGCCGATGTGTACAGCTATGGGGTGGTGTTGCTCGAGCT GATATCGGACAAAAAAGCGTTGGATCCTTCGTTTTCGTCGCAGGAGAATGGGTTCAACATCGTGTCGTGGGTGTGTATGCTGCTGAGGAACGGTAGGGCA AAAGAAGTGTTCGCCGCCGGGCTGTGGGAGCTGAGTCCTCATGATGATCTGGTTGAGATGCTGCATTTGGCTGTGACTTGTACAGATGAGACTCTTTCGA CTAGGCCGACTATGAAACAGGTTCTGCACCGTCTCCGGCTGATCAGACCGGGTTCGAAATGA
AA sequence Show only first row Show all	>Lus10004646 pacid=23176363 polypeptide=Lus10004646 locus=Lus10004646.g ID=Lus10004646.BGIv1.0 annot-version=v1.0 MKLRKLVNEPFLLFLLVLCFSFLYTASSSPEKSALLHFKSTVADLDGVLSAWNSTHHCSFPGVTCNSMAQVISLRLSGSNQNGKLGGKLSPLLGKLSKLK VLSLPFHELRGEIPMEIWGLQDLEVLNLEGNLISSMGFEFPTTSGELRTKLRVLNLGFNRIWGPIPGSISRFNRLEVLNLAGNQLNETVPTSLANCRQLK MISLSSNRLTGRIPSEFGQLRQLRVLDLSDNKLTGPFLGSLSRKCSEMHCVIVNVGSRVSSLAVTSGSSNVRRTLSAADQVSLRYASPENRTEVHVEGSS TRAGNDGMRPIEIASVASASAIVSVLILLVIMFFYLRKRAPNARVVQVSEPKEIIEFVDIGVPLLYEEIVLATENFSMRNCIGNGGFGTTYKAEIAPEIL VAIKRLAIGRFNQGVRQFHAEIKALGTMKHPNLVTLLGFHASESEMFLIYNYLPGGNLESFIRERSASTFQWKTLHKIAMDIARALTYCHDQRILHRDVK PSNILLDDSHNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSQENGFNIVSWVCMLLRNGRA KEVFAAGLWELSPHDDLVEMLHLAVTCTDETLSTRPTMKQVLHRLRLIRPGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	0	1
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	1.0	0.8631
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	4.5	0.8493
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	4.6	0.8552
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	6.2	0.8626
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	9.5	0.8152
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	11.8	0.7930
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	14.7	0.8256
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	21.4	0.7784
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	22.6	0.7858
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	23.0	0.8288

Compare expression of checked genes

Lus10004646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.