Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03630 52 / 1e-07 unknown protein AT5G39200 50 / 8e-07 unknown protein AT3G02125 48 / 7e-06 unknown protein AT1G74220 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026665 [exp] 291 / 2e-95 AT2G03630 73 / 2e-14 unknown protein Lus10036900 [exp] 97 / 1e-21 AT2G03630 82 / 3e-17 unknown protein Lus10037082 [exp] 92 / 7e-20 AT2G03630 82 / 2e-17 unknown protein Lus10030710 [exp] 58 / 3e-09 AT5G39200 71 / 3e-14 unknown protein Lus10013196 [exp] 58 / 4e-09 AT3G02125 67 / 5e-13 unknown protein Lus10032983 [exp] 55 / 3e-08 AT3G02125 59 / 6e-10 unknown protein Lus10029645 [exp] 52 / 4e-07 AT2G03630 62 / 4e-11 unknown protein Lus10021153 [exp] 47 / 3e-05 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096300 [exp] 68 / 4e-12 AT2G03630 91 / 2e-20 unknown protein Potri.010G158000 [exp] 67 / 8e-12 AT2G03630 108 / 7e-27 unknown protein Potri.017G094300 [exp] 53 / 1e-07 AT5G39200 70 / 3e-14 unknown protein Potri.004G120400 [exp] 50 / 2e-06 AT5G39200 68 / 1e-13 unknown protein Potri.015G057200 [exp] 45 / 5e-05 AT1G74220 77 / 9e-16 unknown protein Potri.012G061700 [exp] 41 / 0.0008 AT1G74220 91 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004647 pacid=23176406 polypeptide=Lus10004647 locus=Lus10004647.g ID=Lus10004647.BGIv1.0 annot-version=v1.0 ATGGCGAAGCGGGAAGAGTTAGTTAGGAAACACCCGCCTAAATCATCGGCGAGCCATTCGTCACCGAATCTCAACCTTTCATCCTCTCCAATCCCAAATT CCGATAACCCATCAAACCCCACGAGTCCTTTTGTCTCCTTCTCTCTTCTGTGGTTGACATTGTTTGGACTCCGATCATTCAAGGTGGGGAGAGAAAAAGA GCAGCCGGTGGATGCTCCTTCCGCCGCCGATGATCTGATCCAACCGGCTTCTTGGATCGTCGGAGTTCGTGTTCCTCGGCGGAGGGTTCGATCCTCTCCT CTGTTCGGATTTCCTCACATCTATGAAACGACAGGAAGCAGTACTAAATATTCTACAAGGATAGGCTCTGATATATCATCCAATGAGGATGATGGAAGCA GTCGGAATTCGAGTCTCGACCGTTTCGATGTTGTTCCTGAGACGATCAAGAGACGGATTAGTCATAAGAATTCGGAAGAGGAAGAGGAAACTGATCATGG AAGCTCCAGAATTGGTTCCTTTAAGATAGACGATGATCATCATGCCGCCTGCAGAGGTAACAAAACAAGGTTGCCAATCATCAAAATGGCTTCCTCCTCT TCTGAATCCTCCTCAGAGTCTGATGCGAGCAGCGATTTCGACCTCAGAGTTCACGATCGAGTTGCAATTAGAGAAGGCAGTCCAGTGTTCAAAGGAAAAC CAGCTGGAAACATTCCACCTACTACACAGTTCCCTCCCATTCAAATCATGCAGAGATCGGAAGGCTACGAGCCAGACCGGATACCATCATTGGTGTTCCA GAGGAACACGTCGGATGCACACATCAGCGATTGGAGTGTGGCCTCGAACGAGTCGTTGTTCAGCATTCATGTAGGGAACAGCCATAGCCTCACTAGAGAA CAAGCGGCGATGATCATCAACGAGACGCATAAGTCTCCCAAGTCGCAGCACGGGCAGCAGGAGTTGTTTTCGTTCACCCCTCCTCGATCGAAACAAGAGT CCGCGAGTAGTCCTACTGCATTTCCAGCCTCTTCTCCGGCAGAAGAATCTCGCGAAGAGGACGCGGATGAAGAGGGTGAAACAACATCTCCCCCTTCAGA TGGACATGAACGCGATCCGAAGAAAGTGCCGACTGTCTCATGGAAAGCATCTTCCAAATATTCGGAGAAGAGTCAGAACAGCAGCCAGTCTTTTGCTTTT CCAATATGA
AA sequence Show only first row Show all	>Lus10004647 pacid=23176406 polypeptide=Lus10004647 locus=Lus10004647.g ID=Lus10004647.BGIv1.0 annot-version=v1.0 MAKREELVRKHPPKSSASHSSPNLNLSSSPIPNSDNPSNPTSPFVSFSLLWLTLFGLRSFKVGREKEQPVDAPSAADDLIQPASWIVGVRVPRRRVRSSP LFGFPHIYETTGSSTKYSTRIGSDISSNEDDGSSRNSSLDRFDVVPETIKRRISHKNSEEEEETDHGSSRIGSFKIDDDHHAACRGNKTRLPIIKMASSS SESSSESDASSDFDLRVHDRVAIREGSPVFKGKPAGNIPPTTQFPPIQIMQRSEGYEPDRIPSLVFQRNTSDAHISDWSVASNESLFSIHVGNSHSLTRE QAAMIINETHKSPKSQHGQQELFSFTPPRSKQESASSPTAFPASSPAEESREEDADEEGETTSPPSDGHERDPKKVPTVSWKASSKYSEKSQNSSQSFAF PI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03630			unknown protein		Lus10004647 [exp]	0	1
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Lus10026526 [exp]	22.0	0.6464
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	31.0	0.6374
					Lus10015577 [exp]	72.1	0.5856
AT2G26730			Leucine-rich repeat protein ki...		Lus10032162 [exp]	96.0	0.5634
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10017707 [exp]	120.6	0.5815
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	138.3	0.5361

Compare expression of checked genes

Lus10004647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.