Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26460 748 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 76 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 75 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 73 / 3e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G19440 72 / 7e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G16890 68 / 1e-11 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT2G15630 65 / 8e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 65 / 9e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 64 / 2e-10 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G25630 63 / 3e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026663 [exp] 1128 / 0 AT1G26460 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 74 / 1e-13 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 74 / 3e-13 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042081 [exp] 73 / 4e-13 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 73 / 5e-13 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 73 / 5e-13 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10028850 [exp] 71 / 2e-12 AT5G04810 689 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 70 / 3e-12 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 69 / 5e-12 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159100 [exp] 810 / 0 AT1G26460 766 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 74 / 2e-13 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G070800 [exp] 72 / 7e-13 AT3G46610 780 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 71 / 2e-12 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 71 / 2e-12 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G276500 [exp] 69 / 4e-12 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 69 / 5e-12 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 69 / 5e-12 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G038400 [exp] 67 / 2e-11 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 67 / 3e-11 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004649 pacid=23176400 polypeptide=Lus10004649 locus=Lus10004649.g ID=Lus10004649.BGIv1.0 annot-version=v1.0 ATGACGATCTTAGCTCGGACGAAGCCGATGATCGGTAGGCTTAGCTCCATCAGATCCATTTCCACCTTCCATTTCCACTGCCAGCAGCTCGCGGCGACGG AGCCACCCGAAGGCTACTCCACCGCCGGCGCTGCACAGACACCTCTCCCGCCTAATCCAGCCTCGGGAAGCCCGCTCTACAATGAGAATTGGCGGCGTCC CGTCCAGTCCCCCGGGCTGAACGCGTTCCAGCTGGCTCCGATGGGGCGGATGCAGATGATGTACCAGACGTTCGACGTCGGCTCGCTGCTGAATCTGTTC GCCGATTGGATGACGTCGCAGCGGTGGTCGGACATGAAGGAGCTGTTCGAGTTCTGGGTGAAGTCGCTGGACAAGAACGGGAAGCCGAACAAGCCCGACG TGGATCTGTGTAACCATTACCTTAGAGCGAATCTGATGATGGGAGCTACCGCTGGGGATTTGGTTGATTTGGTTTCCGGGATGCGGGACTTCGACATTGA GCCGAATACGGCTTCGTTTAATTTGGTGTTGAAGGCTATGAACTTGGCGAAGGAGACTGAATCTGCTGAGAAGTTGCTGCAACGGATGGAGACGTCAGGA AAAGAATCTCGGCCAGATGATGAGTCGTATGACTTAGTCATTAGCATGCTGTTGCAGGCAGATGAAATCGATAATGCCTTCAAGTATATCGATAAGATCT TGAAAACGGGCTATACATTATCCATGAAAGTTTTCAATGAATGCGTGCAGATTTGTGTAAACAAAAAGAGTCTCAATGTGTTGGAATCGATTATTGAAAA GTGCAAGGCAACTGAGCAGAACAAGGCACTCGCCCCAACTTGGAGCATGTGCTGCACTATTGCTGAAGCTGCAATGCGGGAAGATAACAGTAATCTTACA TTATCTGCTCTGAAGTTTTTAGCCAAATGGATTGCCAGAGGGGAGACTGCCGTACCGGCTGTACATCTCGCTGTAGATGAAGGACTAATTGTGGCGGCAC TTTCAACTGCCGGCAGGACATGCAATCCTACTCTTCTGGATGCATCGTGGGCCGTTCTTAAACATTCATTGCGTGGGAAAAAGGCTCCTAATCCGGAGTC ATATCTTGGGAAGATATATGCACACGCATCTCTGGGTAGTCTACAACGAGCTTTCGCTACCCTGAAGGAATTCGAGGCTGCTTATGGGGGTTTCGACAAA GAAATAAAAGAAGAGCTGTTCTCTCCGTTTACTTCCCTACGCCCGTTAGTGCTGGCTTGCTCCAAGAACGGCTTCGAGTCTCTTGACTTGGTGTACACCC AACTAGAGAATGTGAGCCAAGGTGCATCCCCATACAAATCAGTTGCTGCTCTCAATTGTGTGATTTTGGGGTGTGCGAATGTATGGGACCTTGACCGTGC CTACCAGACATTTGAGGCGATGGGGACTGCTTTTGGGTTAACCCCTGACATCCACTCATATAACGCATTGATGTTCGCCTTTGCAAGGTTGAAGAAGACG GACGAAGCTTCGAAAGTGTTTGAACACATGGTAGGCTTGGGGATCAAACCCAATGCAATGTCATATTCGTTGATTGTCGACGCTCATCTCATCAACCGAG ATGCAAAAGCGGCTGTATCCACCATCGACAATATGGTTGCTGAAGGGTTCGTTCCAACAAAGGCAATGCTAAGGAAGGTCAGAAGACGGTGCACCCGAGA GATGGACTCAGAGAGCGATGAAAAGGTCACATCGTTGGCCGGACAGTTTAAGATTAGAACTGGTGCAGAGTCACGAAGAGACATGCTGTTCAATCTTCAG TACAGCACTGATTTCGCTTGA
AA sequence Show only first row Show all	>Lus10004649 pacid=23176400 polypeptide=Lus10004649 locus=Lus10004649.g ID=Lus10004649.BGIv1.0 annot-version=v1.0 MTILARTKPMIGRLSSIRSISTFHFHCQQLAATEPPEGYSTAGAAQTPLPPNPASGSPLYNENWRRPVQSPGLNAFQLAPMGRMQMMYQTFDVGSLLNLF ADWMTSQRWSDMKELFEFWVKSLDKNGKPNKPDVDLCNHYLRANLMMGATAGDLVDLVSGMRDFDIEPNTASFNLVLKAMNLAKETESAEKLLQRMETSG KESRPDDESYDLVISMLLQADEIDNAFKYIDKILKTGYTLSMKVFNECVQICVNKKSLNVLESIIEKCKATEQNKALAPTWSMCCTIAEAAMREDNSNLT LSALKFLAKWIARGETAVPAVHLAVDEGLIVAALSTAGRTCNPTLLDASWAVLKHSLRGKKAPNPESYLGKIYAHASLGSLQRAFATLKEFEAAYGGFDK EIKEELFSPFTSLRPLVLACSKNGFESLDLVYTQLENVSQGASPYKSVAALNCVILGCANVWDLDRAYQTFEAMGTAFGLTPDIHSYNALMFAFARLKKT DEASKVFEHMVGLGIKPNAMSYSLIVDAHLINRDAKAAVSTIDNMVAEGFVPTKAMLRKVRRRCTREMDSESDEKVTSLAGQFKIRTGAESRRDMLFNLQ YSTDFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	0	1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	1.0	0.9563
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	1.4	0.9534
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	1.7	0.9522
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	2.0	0.9427
AT1G73240			unknown protein		Lus10026211 [exp]	3.2	0.9238
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	3.2	0.9409
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018149 [exp]	4.7	0.9094
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	5.5	0.9178
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	6.0	0.9229
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	6.0	0.9256

Compare expression of checked genes

Lus10004649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.