Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 117 / 6e-33 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G03505 113 / 2e-31 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 103 / 6e-27 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT5G61130 101 / 2e-26 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT1G13830 98 / 3e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G08000 98 / 4e-25 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT1G26450 98 / 5e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G13600 84 / 1e-19 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 86 / 5e-19 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G79480 84 / 9e-19 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026662 [exp] 172 / 2e-53 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 152 / 6e-46 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 152 / 6e-46 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 115 / 7e-31 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 108 / 2e-28 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 106 / 3e-28 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 106 / 4e-28 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 92 / 5e-23 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10000278 [exp] 85 / 4e-19 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158900 [exp] 137 / 4e-40 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 134 / 4e-39 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 106 / 4e-28 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 104 / 2e-27 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 94 / 2e-23 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 87 / 5e-21 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.004G010500 [exp] 86 / 3e-19 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 86 / 3e-19 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G173500 [exp] 84 / 1e-18 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 83 / 2e-18 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10004650 pacid=23176396 polypeptide=Lus10004650 locus=Lus10004650.g ID=Lus10004650.BGIv1.0 annot-version=v1.0 ATGGCTGTTCTAGCGTTTCTAGCCATGTTCCTGGCCCTCTCTGGCCATTCAAGTGCTAACTACTGTCTTTGCAAAGATGGAGTTGGGGAGCTAGCTCTGC AGAAGGCCTTGGACTACGCCTGTGGAGCTGGAGCTGACTGTACAGCAATCAGCCAGAATGGAGCTTGTTTCCAACCCAATACTGTCAAAGATCACTGCAG CTATGCTGTCAATAGCTACTTCCAGAAAAAGGGCCAAACTTCTGGGAGCTGTGAGTTCAATGGTGCTGCTACTCCTAGTACTTCACCCCCCACTGGTGTA ACTTCCACCTGTGTTTTCCCTGCTAGCCCTGGAAATGCTGGAACATCACCGACAACAAACCCTGGATCATCAACTCCTGGAACCAGCACTGGAACCAGCA CAGGCACTGGAACTGGTACTAGTACTGGGACAGGAAGTACTGGTGCAAGCACTGGAACTGGTACAAGCACAGGAAATGGCACTGGTGGAATGGGAACTGG AACTGGAACAAGCACAGGGATGAACCCAGGATCATCGTCTACCGGAACTGGAACAACTCCATCCGTGTTTGGAACAGGGTTGGGACCAACTGGGAGTGGA ACTGGGATGGGTGACTCCAGTGGTTCTACTTCTACTATGGACTCAACCAATTTGTTCATCTTGGTTGCTGCTGGGTTGATGGTGCTTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10004650 pacid=23176396 polypeptide=Lus10004650 locus=Lus10004650.g ID=Lus10004650.BGIv1.0 annot-version=v1.0 MAVLAFLAMFLALSGHSSANYCLCKDGVGELALQKALDYACGAGADCTAISQNGACFQPNTVKDHCSYAVNSYFQKKGQTSGSCEFNGAATPSTSPPTGV TSTCVFPASPGNAGTSPTTNPGSSTPGTSTGTSTGTGTGTSTGTGSTGASTGTGTSTGNGTGGMGTGTGTSTGMNPGSSSTGTGTTPSVFGTGLGPTGSG TGMGDSSGSTSTMDSTNLFILVAAGLMVLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	0	1
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	1.0	0.8967
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	2.4	0.8947
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	2.4	0.8800
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	2.8	0.8949
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	3.5	0.8900
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	4.5	0.8515
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	5.5	0.8899
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	7.1	0.8318
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	8.0	0.8707
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	9.5	0.8736

Compare expression of checked genes

Lus10004650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.