Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026661 [exp] 566 / 0 ND / Lus10036058 [exp] 142 / 9e-39 ND / Lus10019696 [exp] 46 / 5e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004651 pacid=23176375 polypeptide=Lus10004651 locus=Lus10004651.g ID=Lus10004651.BGIv1.0 annot-version=v1.0 ATGTTATTGTCGGTGAAGAAAAAAGCAAACAGGGCCAAGGCACAAGCCGAGTCACAGAAACGACCGTGGGTGCCATTCGAAGATCGGCTTAAGGGTTGGA TGATCGAGCGTCGCGCACGCCGCGATAATTCGCCTATCCAGCACGATATGTATTATTATCACAAATCCGGAGTATATTTCAGATCGAAAAATCTTGTGAT TAAATTCGTGCTACACAATGAATATCCATCGCCAGCATCAACAGACAGGGACGATCGCGGGGCCAGGCTCGAGCCTGAGTCGGGGAGCGTTAAGTCCTCG AAACCAAAAAGGGCTTACAAGAGGAAACTCTTGGTATCGTCAGGCTCACCGATATCCCCGTCTGCTCCATCGTCGCCGAAAAGACAAAGAATAGGCGACG AAAAAATCCGAATTGATATTGATTCTCCTCGGGAAGAAACGGCGGCTGCCCAAGACTGGTTGAGCTTTGTGAAGGCGACTGCACCTCAAGATGCCACAGT AGAGGCAATGAATGAAGAGGGTGAACCTCGATTTGGCAAACTGGTCGACCAAGTCCTCGAGCTCGTAGCTAGAGAGGAGTCTGAGGCGGATCATCAAACC ATCAGTGCACCTGATCCCATCAGTTCCGTTAACGAGAACGAGAACCAAAACCAGAACCAGGATGGCTCTAGGGTTGGAGCTGAGGTTGTCAATGATGGTG CGAATCTGGCTGTGGTTCCTAGTAACATCGAGGTCGTGGATGTTGCTCCGGTGGAAGGAGAATTCGGTGTGCCTGTTGCTGAAGATGTTAATCATACTAG CAAGAATGGCAAGGGAAATGATCATGTTGAGTGTGTTGTTGGAGCTGCTGCAACAACAAACTGGTATGTGGCCCCCAGGTTCGAGGAAGAGACGTACAAG GAGGGTATGATAAGTGCGGCCTGGCTCGACTCTAAGACGCTCGAGGATCCCACCATGCCTAATGCACCAGCAACTGAAGATAATCATACCATCACGAATG CATCGGAGCAGAAGGTCTCATTCCAGGCGGAGACACACAAGGTTGACAACGAGAGCGATGACTGGTGGAAAACTCTCAACCCGGGTAATAGCGGAGATGA CGATCTATACTCCATAGTTCGTTCTTATGCTAATCTGAGACAACATCGTGATAGAAACCCAAACCCAAATCCCAACCCTGATTTCAAAAGTCCTCAAATT CGAGGGTTTGATGATACTGCGGACTATGCTAATGTGGGACCGAGTCAAGTCGGCGATAGAAATCAAAACCCTAACCCTAACCCTGATTTCAAAAGTCCTC AATTTCCAGGATTTGATGACGGTGTTACGGGCTATAATTACCTTGATGATCCGTCCTTGTTTCATCCTTCAAGTTGGGATTTCGACTATCCGGGACCGTT CAATTTTTAG
AA sequence Show only first row Show all	>Lus10004651 pacid=23176375 polypeptide=Lus10004651 locus=Lus10004651.g ID=Lus10004651.BGIv1.0 annot-version=v1.0 MLLSVKKKANRAKAQAESQKRPWVPFEDRLKGWMIERRARRDNSPIQHDMYYYHKSGVYFRSKNLVIKFVLHNEYPSPASTDRDDRGARLEPESGSVKSS KPKRAYKRKLLVSSGSPISPSAPSSPKRQRIGDEKIRIDIDSPREETAAAQDWLSFVKATAPQDATVEAMNEEGEPRFGKLVDQVLELVAREESEADHQT ISAPDPISSVNENENQNQNQDGSRVGAEVVNDGANLAVVPSNIEVVDVAPVEGEFGVPVAEDVNHTSKNGKGNDHVECVVGAAATTNWYVAPRFEEETYK EGMISAAWLDSKTLEDPTMPNAPATEDNHTITNASEQKVSFQAETHKVDNESDDWWKTLNPGNSGDDDLYSIVRSYANLRQHRDRNPNPNPNPDFKSPQI RGFDDTADYANVGPSQVGDRNQNPNPNPDFKSPQFPGFDDGVTGYNYLDDPSLFHPSSWDFDYPGPFNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004651 [exp]	0	1
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	1.7	0.9858
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	4.2	0.9810
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	4.7	0.9674
AT1G58070			unknown protein		Lus10015482 [exp]	4.9	0.9787
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	7.4	0.9784
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	7.7	0.9701
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	7.9	0.9757
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	8.1	0.9766
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	8.2	0.9785
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	8.5	0.9738

Compare expression of checked genes

Lus10004651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.